View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21022_low_6 (Length: 435)
Name: NF21022_low_6
Description: NF21022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21022_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 27954919 - 27955078
Alignment:
| Q |
19 |
aaaagatgtaattaattattcaattgatatgaattattgtttaagtattggatttagtattttagtatatgataatctgaatctgtaaccgtgtgtgaaa |
118 |
Q |
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| T |
27954919 |
aaaagatgtaattaattattcaattgatatgaattattgtttaagtattggatttagtattttagtatatgataatctgaatctgtaaccgtgtgtgaaa |
27955018 |
T |
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| Q |
119 |
ttgatgcttaaagctgtaattaattgttcaattttgtaagaatcattgtttaagtgttgg |
178 |
Q |
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| T |
27955019 |
ttgatgcttaaagctgtaattaattgttcaattttgtaagaatcattgtttaagtgttgg |
27955078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 240 - 425
Target Start/End: Original strand, 27955140 - 27955325
Alignment:
| Q |
240 |
gaatctgcaatagagggccaatttgtcacttaaagctgtagttaattgttcatttccttggaagcattgtataagtgtttgatttagtgtgtgaaattga |
339 |
Q |
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| T |
27955140 |
gaatctgtaatagagggccaatttgtcgcttaaagctgtagttaattgttcatatccttggaagcattgtttaagtgttcgatttagtgtgtgaaattga |
27955239 |
T |
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| Q |
340 |
atctgtgatagtgtgagaaattgatttgttgatattgtttttggttgatttgtaggtacaaattgggacacatgcgtttacctatg |
425 |
Q |
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| T |
27955240 |
atctgtgatagtgtgcgaaattgatttgttgatattgtttttggctgatttttaggtacaaattgggacacatgcgtttacctatg |
27955325 |
T |
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