View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21022_low_7 (Length: 405)

Name: NF21022_low_7
Description: NF21022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21022_low_7
NF21022_low_7
[»] chr7 (20 HSPs)
chr7 (1-405)||(8546064-8546469)
chr7 (243-405)||(8576758-8576920)
chr7 (243-405)||(8582132-8582294)
chr7 (242-405)||(8570743-8570906)
chr7 (242-403)||(8559767-8559928)
chr7 (242-402)||(29577242-29577402)
chr7 (242-321)||(7877306-7877385)
chr7 (243-345)||(8585280-8585382)
chr7 (243-321)||(8602490-8602568)
chr7 (242-402)||(8667854-8668014)
chr7 (242-321)||(8538552-8538631)
chr7 (242-321)||(29581414-29581493)
chr7 (244-345)||(3147764-3147865)
chr7 (242-402)||(8635916-8636076)
chr7 (243-297)||(8382450-8382504)
chr7 (244-345)||(8654942-8655043)
chr7 (243-385)||(1301916-1302058)
chr7 (243-321)||(8610433-8610511)
chr7 (256-345)||(8671217-8671306)
chr7 (244-345)||(10493949-10494050)
[»] chr8 (1 HSPs)
chr8 (242-402)||(12528939-12529099)
[»] chr2 (1 HSPs)
chr2 (243-380)||(16661566-16661703)
[»] chr4 (3 HSPs)
chr4 (303-402)||(9335525-9335624)
chr4 (243-345)||(35132938-35133040)
chr4 (265-325)||(9337586-9337646)
[»] chr5 (1 HSPs)
chr5 (162-222)||(43537560-43537620)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 8546469 - 8546064
Alignment:
Q  1 tgggtttgatatactcatatagttaataattgtgctagataaaagatagaaggcaaactagaaaaaatgttttttcagaaaccataacaactatgtttta 100  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546469 tgggtttgatatactcata--gttaataattgtgctagataaaagatagaaggcaaactagaaaaaatgttttttcagaaaccataacaactatgtttta 8546372  T
Q  101 ccattttcaaaacttccaaaaatgtcaaatatgttacaaaaattgtagaagaga---acaagtgaaatattgaatctatgctctcatgtgtttattagtt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  8546371 ccattttcaaaacttccaaaaatgtcaaatatgttacaaaaattgtagaagagaatgacaagtgaaatattgaatctatgctctcatgtgtttattagtt 8546272  T
Q  198 gatatgaaaatgaaaataggaagtaaatgtgcccttannnnnnngcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatga 297  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  8546271 gatatgaaaatgaaaataggaagtaaatgtgcccttttttttttgcagatgcaaagaggttaattggaaggaaatatagtgattcctttgttcagaatga 8546172  T
Q  298 tctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546171 tctactgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaa 8546072  T
Q  398 atatcatc 405  Q
    ||||||||    
T  8546071 atatcatc 8546064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 243 - 405
Target Start/End: Complemental strand, 8576920 - 8576758
Alignment:
Q  243 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaa 342  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||   || ||||||||||||||||||||| |||||  |||||||||    
T  8576920 cagatacaaagaggttaattggaaggaaatatagtgattccattgttcagaaggattgtcttttgtggccctttaaggtcattgccggtactaatgacaa 8576821  T
Q  343 accgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatc 405  Q
    |||||||||  ||||||||||||| ||||||||||| | ||||||||||||||||||||||||    
T  8576820 accgacaatcgttgtgaactacaaaggtgaggaaaaacgctttgttgctgaagaaatatcatc 8576758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 243 - 405
Target Start/End: Complemental strand, 8582294 - 8582132
Alignment:
Q  243 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaa 342  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| || ||| |   |||||||||||| |||||||   | |||| |||||||||    
T  8582294 cagatgcaaagaggttaattggaaggaaatatagtgattccattgttcaaaaggatatcaagttgtggcccttcaaggtcaccgcaggtgctaatgacaa 8582195  T
Q  343 accgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatc 405  Q
    |||||||||  ||||||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  8582194 accgacaatcgttgtgaactacaagggtaaggaaaaacactttcttgctgaagaaatatcatc 8582132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 242 - 405
Target Start/End: Complemental strand, 8570906 - 8570743
Alignment:
Q  242 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgaca 341  Q
    ||||||| ||||| ||||||||||||||| |||||||||||||| |||||||  |||| ||| |||||||||||||||||||| ||||||| |||  |||    
T  8570906 gcagatgtaaagaggttaattggaaggaagtatagtgattccatcgttcagatggatcgacttttgtggccctttaaggtcatctccggtgctaacaaca 8570807  T
Q  342 aaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatcatc 405  Q
    |||| |||||  ||||||| |||| |||| ||||||| |  ||||| |||||||||||||||||    
T  8570806 aaccaacaatcattgtgaagtacatgggtaaggaaaaacgttttgtagctgaagaaatatcatc 8570743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 403
Target Start/End: Complemental strand, 8559928 - 8559767
Alignment:
Q  242 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgaca 341  Q
    ||||||||||||| |||||||||||||||||| ||||||||||| || || | |||| |||||||||||||||||||||||||  | || | ||||||||    
T  8559928 gcagatgcaaagaggttaattggaaggaaatacagtgattccatagtccaaagtgatgtactgttgtggccctttaaggtcatcgctggcgataatgaca 8559829  T
Q  342 aaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatca 403  Q
    |||| ||  | |||||||| |||| |||  ||||||||||  ||||||| ||||||||||||    
T  8559828 aaccaacggtccttgtgaaatacaggggcaaggaaaagcatcttgttgccgaagaaatatca 8559767  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 242 - 402
Target Start/End: Original strand, 29577242 - 29577402
Alignment:
Q  242 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgaca 341  Q
    |||||||| |||| |||||||||||||||||  |||||||||||| ||| ||| ||| ||  |||||||||||||||||||||| | || | | ||||||    
T  29577242 gcagatgcgaagaggttaattggaaggaaattcagtgattccattattcggaaagatataaagttgtggccctttaaggtcattcctggagctgatgaca 29577341  T
Q  342 aaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatc 402  Q
    | || |  || ||||| || ||||||||  | || |||  |||||||||||| ||||||||    
T  29577342 atcccaagatccttgttaagtacaagggcaaagagaagtgctttgttgctgaggaaatatc 29577402  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 7877306 - 7877385
Alignment:
Q  242 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggt 321  Q
    ||||||||||||| ||| ||||||||||||||||| |||||  || ||||||||||| | ||||||||||| ||||||||    
T  7877306 gcagatgcaaagaggttgattggaaggaaatatagcgattctgttattcagaatgatattctgttgtggccatttaaggt 7877385  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 345
Target Start/End: Original strand, 8585280 - 8585382
Alignment:
Q  243 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaa 342  Q
    ||||||| |||| ||||||||| ||||| | ||||||| || ||||||| |||||| || |||||||||| || ||||| || || ||||||||||||||    
T  8585280 cagatgccaagaggttaattggtaggaagtttagtgatcccgttgttcaaaatgatataatgttgtggccattcaaggttatctctggtgttaatgacaa 8585379  T
Q  343 acc 345  Q
    |||    
T  8585380 acc 8585382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 8602568 - 8602490
Alignment:
Q  243 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggt 321  Q
    |||||||||||| |||||||||||||||||||||||||||  |  ||||||||||  ||| ||||||||| ||||||||    
T  8602568 cagatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagaatgacatacggttgtggccatttaaggt 8602490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 402
Target Start/End: Complemental strand, 8668014 - 8667854
Alignment:
Q  242 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgaca 341  Q
    |||||||| |||| ||||||||| ||||| | ||||||  || ||||||| |  ||| || |||||||||| || ||||| ||||| |||||||||||||    
T  8668014 gcagatgctaagaggttaattggtaggaagtttagtgaccccgttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgaca 8667915  T
Q  342 aaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatc 402  Q
    |||| |  |||  ||| || ||||||||| | || |||||||||  |||||| ||||||||    
T  8667914 aacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatc 8667854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 8538631 - 8538552
Alignment:
Q  242 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggt 321  Q
    |||||||| |||| |||  ||||||| ||||||||||||||  || ||||||||||| |||||||||||||||| |||||    
T  8538631 gcagatgctaagaggttggttggaagaaaatatagtgattctgttattcagaatgatttactgttgtggcccttcaaggt 8538552  T

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Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 29581414 - 29581493
Alignment:
Q  242 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggt 321  Q
    ||||||||||||| |||||| ||||| |||||||||||||| ||| ||||| ||||| ||   |||||||||||||||||    
T  29581414 gcagatgcaaagaggttaatcggaagaaaatatagtgattctattattcaggatgatataaatttgtggccctttaaggt 29581493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 345
Target Start/End: Complemental strand, 3147865 - 3147764
Alignment:
Q  244 agatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaa 343  Q
    ||||||||||| ||||||||| ||||| | | |||||||  ||||||| |||||| |  |||||||||| || |||||||||| ||| || |||||||||    
T  3147865 agatgcaaagaggttaattggtaggaagtttggtgattctgttgttcaaaatgatatgatgttgtggccattcaaggtcatttgcggagtgaatgacaaa 3147766  T
Q  344 cc 345  Q
    ||    
T  3147765 cc 3147764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 242 - 402
Target Start/End: Original strand, 8635916 - 8636076
Alignment:
Q  242 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgaca 341  Q
    ||||||| ||| | ||| ||||||||||| ||||||||| | ||  ||||||||||||||    |||||||||||||||| ||| | |||  | ||||||    
T  8635916 gcagatgtaaaaaggttgattggaaggaattatagtgatccaataattcagaatgatctaaatatgtggccctttaaggtaattgctggtcgtgatgaca 8636015  T
Q  342 aaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatc 402  Q
    |||| |  ||| ||||||| |||||||||||  |||||||  || || |||| ||||||||    
T  8636016 aacccatgattgttgtgaaatacaagggtgaacaaaagcaactttttcctgaggaaatatc 8636076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 297
Target Start/End: Original strand, 8382450 - 8382504
Alignment:
Q  243 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatga 297  Q
    ||||||||||||  || ||||||||||||||||||||||| ||| ||||||||||    
T  8382450 cagatgcaaagagattgattggaaggaaatatagtgattctattattcagaatga 8382504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 345
Target Start/End: Complemental strand, 8655043 - 8654942
Alignment:
Q  244 agatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaa 343  Q
    |||||| |||| ||||||||| ||||| ||||||||| | |||||||| || ||| |  |||||||||| || | ||| | ||| |||||||||||||||    
T  8655043 agatgctaagaggttaattggtaggaagtatagtgatcctattgttcaaaaggatatcatgttgtggccattcatggttacttctggtgttaatgacaaa 8654944  T
Q  344 cc 345  Q
    ||    
T  8654943 cc 8654942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 385
Target Start/End: Complemental strand, 1302058 - 1301916
Alignment:
Q  243 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaa 342  Q
    ||||||| ||||  |||||||| ||||| | |||||||||  ||||||| || ||  |  |||||||||| || ||||||||  ||||||| ||||||||    
T  1302058 cagatgctaagagattaattggtaggaagtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggtcatcgccggtgtgaatgacaa 1301959  T
Q  343 accgacaattcttgtgaactacaagggtgaggaaaagcacttt 385  Q
    |||    ||| |||| || ||||||||| |||| |||||||||    
T  1301958 acccgtgattgttgttaagtacaagggtcaggagaagcacttt 1301916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 321
Target Start/End: Complemental strand, 8610511 - 8610433
Alignment:
Q  243 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggt 321  Q
    |||||||||||| ||| ||||||||||||||||| |||||  || |  | || ||||| | ||||||||||||||||||    
T  8610511 cagatgcaaagaggttgattggaaggaaatatagcgattctgttataaaaaacgatcttcagttgtggccctttaaggt 8610433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 345
Target Start/End: Original strand, 8671217 - 8671306
Alignment:
Q  256 gttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaacc 345  Q
    ||||||||| ||||| | ||||||| |  ||||||| |  ||| || |||||||||| || ||||| ||||| |||||||||||||||||    
T  8671217 gttaattggtaggaagtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaacc 8671306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 345
Target Start/End: Original strand, 10493949 - 10494050
Alignment:
Q  244 agatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaaa 343  Q
    |||||| |||| ||||||||| ||||| | ||||||| |  ||||||| || ||| || |||||||||| || ||||| | ||| ||||| |||||||||    
T  10493949 agatgctaagaggttaattggcaggaagtttagtgatccggttgttcaaaacgatataatgttgtggccattcaaggttacttcaggtgtcaatgacaaa 10494048  T
Q  344 cc 345  Q
    ||    
T  10494049 cc 10494050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 242 - 402
Target Start/End: Complemental strand, 12529099 - 12528939
Alignment:
Q  242 gcagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgaca 341  Q
    ||||||||||||| |||||||||||| || |||||||| ||||| |||||||| |||| |||||||||||| |||||||||| | | |||| ||||||||    
T  12529099 gcagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaaggatcaactgttgtggccatttaaggtcactgctggtgctaatgaca 12529000  T
Q  342 aaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatc 402  Q
    ||||||  || |||||||||||||| ||  ||||| | |||||||||||||||||||||||    
T  12528999 aaccgaagatccttgtgaactacaatgggaaggaacatcactttgttgctgaagaaatatc 12528939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 380
Target Start/End: Original strand, 16661566 - 16661703
Alignment:
Q  243 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaa 342  Q
    ||||||| |||| ||||||||| ||||||| ||||||  || ||||||| || ||| ||||||||||||| || ||||| ||| | ||||||||||||||    
T  16661566 cagatgctaagaggttaattggtaggaaatttagtgaccccgttgttcaaaaagatatactgttgtggccgttcaaggttattgctggtgttaatgacaa 16661665  T
Q  343 accgacaattcttgtgaactacaagggtgaggaaaagc 380  Q
    ||| || |||  ||| || ||||||||| |||| ||||    
T  16661666 acctacgattagtgttaagtacaagggtcaggagaagc 16661703  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 402
Target Start/End: Original strand, 9335525 - 9335624
Alignment:
Q  303 tgttgtggccctttaaggtcatttccggtgttaatgacaaaccgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatc 402  Q
    |||||||||| || ||||| ||||| ||||||||||||||||| |  |||  ||| |||||||||||| | || |||||||||  |||||| ||||||||    
T  9335525 tgttgtggccattcaaggttatttctggtgttaatgacaaacctatgattactgttaactacaagggtcaagagaagcacttttgtgctgaggaaatatc 9335624  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 345
Target Start/End: Complemental strand, 35133040 - 35132938
Alignment:
Q  243 cagatgcaaagaagttaattggaaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaa 342  Q
    ||||||| || | ||||||||| ||||| | ||||||| | ||||||||  ||||| ||||| | ||||| || ||||||| | ||||||| ||||||||    
T  35133040 cagatgctaaaaggttaattggtaggaagtttagtgatcctattgttcaagatgatatactgctatggccattcaaggtcactgccggtgtaaatgacaa 35132941  T
Q  343 acc 345  Q
    |||    
T  35132940 acc 35132938  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 325
Target Start/End: Original strand, 9337586 - 9337646
Alignment:
Q  265 aaggaaatatagtgattccattgttcagaatgatctactgttgtggccctttaaggtcatt 325  Q
    |||||| ||||| ||| | ||| |||||||||||||| |||| |||||||||||| |||||    
T  9337586 aaggaactatagcgatccaattattcagaatgatctaatgttatggccctttaagctcatt 9337646  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 43537620 - 43537560
Alignment:
Q  162 aaatattgaatctatgctctcatgtgtttattagttgatatgaaaatgaaaataggaagta 222  Q
    ||||||| |||||||  |||| | ||||||||||||||  |||||||||||| ||||||||    
T  43537620 aaatattaaatctatattctcctatgtttattagttgaagtgaaaatgaaaacaggaagta 43537560  T

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