View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21023_high_3 (Length: 304)
Name: NF21023_high_3
Description: NF21023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21023_high_3 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 17532243 - 17532515
Alignment:
| Q |
16 |
atgatgtctgatggctatatgttttgttcttccatgaaagacgggattcttagccatagcaatgacttatttattatcacaatggatagtcacaacttct |
115 |
Q |
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||||||| ||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
17532243 |
atgatgtttgatggctatatgctttgttcttccatcaaagatgggattctcagccatagcaatggctgatttattatcacaatggatagtcacagcttct |
17532342 |
T |
|
| Q |
116 |
tgtttctcaccaaagtcttcaagtattctcttcaaccatattgcttgttgagtagctaagccagctgaaatatattcagcttctgcagaagattgagcaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17532343 |
tgtttctcaccaaagtcttcaagtattctcttcaaccatattgtttgttgagtagctaagccagctgaaatatattcagcttctgcagaagattgagcaa |
17532442 |
T |
|
| Q |
216 |
cagtttgttgtttctttgagcaccacgaaactgctcctgaacctaatgagaaaacatatccagaggtgctttt |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17532443 |
cagtttgttgtttctttgagcaccacgaaactgctcctgaacctaatgagaaaacatatccagaggtgctttt |
17532515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 26410748 - 26410621
Alignment:
| Q |
131 |
tcttcaagtattctcttcaaccatattgcttgttgagtagctaagccagctgaaatatattcagcttctgcagaagattgagcaacagtttgttgtttct |
230 |
Q |
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|||||||||||||| ||||||| | || |||||| ||||| || ||||||| | |||||| ||||| | |||||||| || ||||| | |||||||| |
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| T |
26410748 |
tcttcaagtattcttctcaaccacaatgattgttgtgtagccaaaccagctgccaaatattctgcttcagttgaagattgcgctacagtgtcttgtttct |
26410649 |
T |
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| Q |
231 |
ttgagcaccacgaaactgctcctgaacc |
258 |
Q |
| |
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|||| ||||| |||| | |||||||||| |
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| T |
26410648 |
ttgaacaccaagaaattactcctgaacc |
26410621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 34719 - 34999
Alignment:
| Q |
7 |
tcgaagaatatgatgtctgatggctatatgttttgttcttccatgaaagacgggattcttagccatagcaatgacttatttattatcacaatggatagtc |
106 |
Q |
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||||| || ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |
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| T |
34719 |
tcgaataaaatgatgtttgatggctatatgtgttgttcttccatgaaagacgggattcttagccatagcaatggctgatttattatcagaatggatagtc |
34818 |
T |
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| Q |
107 |
acaacttcttgtttctcaccaaagtcttcaagtattctcttcaaccatattgcttgttgagtagctaagccagctgaaatatattcagcttctgcagaag |
206 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34819 |
acgacttcttgtttctcaccaaagtcttcaagtattctcttcaaccatattgcttgttgagtagctaagccagctgaaatatattcagcttctgcagaag |
34918 |
T |
|
| Q |
207 |
attgagcaacagtttgttgtttctttgagcaccacgaaactgctcctgaacctaatgagaaaacatatccagaggtgctttt |
288 |
Q |
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||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34919 |
attaagcaacagtttgttgtttctttgacca-cacgaaactgctcctgaacctaatgagaaaacatatccagagttgctttt |
34999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 27206291 - 27206418
Alignment:
| Q |
131 |
tcttcaagtattctcttcaaccatattgcttgttgagtagctaagccagctgaaatatattcagcttctgcagaagattgagcaacagtttgttgtttct |
230 |
Q |
| |
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|||||||||||||| ||||||| | || |||||| ||||| || ||||||| | |||||| ||||| || |||||||| || ||||| | |||||||| |
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| T |
27206291 |
tcttcaagtattcttctcaaccacaatgattgttgtgtagccaaaccagctgccaaatattctgcttcagctgaagattgcgctacagtgtcttgtttct |
27206390 |
T |
|
| Q |
231 |
ttgagcaccacgaaactgctcctgaacc |
258 |
Q |
| |
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|||| ||||| |||| | |||||||||| |
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| T |
27206391 |
ttgaacaccaagaaattactcctgaacc |
27206418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 26897878 - 26898005
Alignment:
| Q |
131 |
tcttcaagtattctcttcaaccatattgcttgttgagtagctaagccagctgaaatatattcagcttctgcagaagattgagcaacagtttgttgtttct |
230 |
Q |
| |
|
|||||||||||||| ||||||| | || |||||| ||||| || ||||||| | |||||| ||||| || |||||||| || ||||| | |||||||| |
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| T |
26897878 |
tcttcaagtattcttctcaaccacaatgattgttgtgtagccaaaccagctgccaaatattctgcttcagctgaagattgcgctacagtgtcttgtttct |
26897977 |
T |
|
| Q |
231 |
ttgagcaccacgaaactgctcctgaacc |
258 |
Q |
| |
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|||| ||||| |||| | |||||||||| |
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| T |
26897978 |
ttgaacaccaagaaattactcctgaacc |
26898005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 23678862 - 23678735
Alignment:
| Q |
131 |
tcttcaagtattctcttcaaccatattgcttgttgagtagctaagccagctgaaatatattcagcttctgcagaagattgagcaacagtttgttgtttct |
230 |
Q |
| |
|
|||||||||||||| ||||||| | || |||||| ||||| || ||||||| | |||||| ||||| || |||||||| || ||||| | |||||||| |
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| T |
23678862 |
tcttcaagtattcttctcaaccacaatgattgttgtgtagccaaaccagctgccaaatattctgcttcagctgaagattgcgctacagtgtcttgtttct |
23678763 |
T |
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| Q |
231 |
ttgagcaccacgaaactgctcctgaacc |
258 |
Q |
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|||| ||||| |||| | |||||||||| |
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| T |
23678762 |
ttgaacaccaagaaattactcctgaacc |
23678735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 24051138 - 24051011
Alignment:
| Q |
131 |
tcttcaagtattctcttcaaccatattgcttgttgagtagctaagccagctgaaatatattcagcttctgcagaagattgagcaacagtttgttgtttct |
230 |
Q |
| |
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|||||||||||||| ||||||| | || |||||| ||||| || ||||||| | |||||| ||||| || |||||||| || ||||| | |||||||| |
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| T |
24051138 |
tcttcaagtattcttctcaaccacaatgattgttgtgtagccaaaccagctgccaaatattctgcttcagctgaagattgcgctacagtgtcttgtttct |
24051039 |
T |
|
| Q |
231 |
ttgagcaccacgaaactgctcctgaacc |
258 |
Q |
| |
|
|||| ||||| |||| | |||||||||| |
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|
| T |
24051038 |
ttgaacaccaagaaattactcctgaacc |
24051011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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