View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21023_high_5 (Length: 256)
Name: NF21023_high_5
Description: NF21023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21023_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 36 - 239
Target Start/End: Complemental strand, 52720892 - 52720689
Alignment:
| Q |
36 |
agttgatttgaattacttaactctagagaatgatgattttcacaaaaactacgattacttcactaatgttttaaaattagttaccacggcatagattgct |
135 |
Q |
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| T |
52720892 |
agttgatttgaattacttaactctagagaatgatgattttcacaaaaactacgattacttcactaatgtttaaaaattagttaccacggcatagattgct |
52720793 |
T |
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| Q |
136 |
gagaaaacaataatagttttgaagcgacccaaataagcatctgctagaaatgctccaaagagggtgagtacataggcagctccagcccagtctgtgacat |
235 |
Q |
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| T |
52720792 |
gagaaaacaataatagttttgaagcgacccaaataagcatctgctagaaatgctccaaagagggtgagtacataggcagctccagcccagtctgtgacat |
52720693 |
T |
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| Q |
236 |
gagt |
239 |
Q |
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|||| |
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| T |
52720692 |
gagt |
52720689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 52712046 - 52711810
Alignment:
| Q |
18 |
aaaaactatgatatcatcagttgatttgaattacttaact---------ctagagaatgatgattttcacaaaaactacgattacttcactaat------ |
102 |
Q |
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| T |
52712046 |
aaaaactatgatatcatcagttgatttgaattacttcactaatgacactctagagaatgatgattttcacaaaaactatgattacttcattaattttaat |
52711947 |
T |
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| Q |
103 |
gttttaaaattagttaccacggcatagattgctgagaaaacaataatagttttgaagcgacccaaataagcatctgctagaaatgctccaaagagggtga |
202 |
Q |
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| T |
52711946 |
gtttaaaatttagttaccacggcatagatggctgagaaaacaatgatagttttgaagcgaccaaaataagcatctgctagaaatgctccaaagagggtga |
52711847 |
T |
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| Q |
203 |
gtacataggcagctccagcccagtctgtgacatgagt |
239 |
Q |
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| T |
52711846 |
gtacataggcagctccaatccagtctgtgacatgagt |
52711810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 52698263 - 52698140
Alignment:
| Q |
116 |
ttaccacggcatagattgctgagaaaacaataatagttttgaagcgacccaaataagcatctgctagaaatgctccaaagagggtgagtacataggcagc |
215 |
Q |
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||||||| |||||||| | ||||||||||| || ||| | || ||||| | ||||||||||| | ||| |||||||||| ||||| ||||| ||||| |
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| T |
52698263 |
ttaccacagcatagatggtagagaaaacaatgatggttctaaatcgaccaaggtaagcatctgcaataaacgctccaaagatagtgaggacataagcagc |
52698164 |
T |
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| Q |
216 |
tccagcccagtctgtgacatgagt |
239 |
Q |
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||||| |||||||||||||||||| |
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| T |
52698163 |
tccagtccagtctgtgacatgagt |
52698140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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