View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21023_low_1 (Length: 893)

Name: NF21023_low_1
Description: NF21023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21023_low_1
NF21023_low_1
[»] chr1 (32 HSPs)
chr1 (444-874)||(45232241-45232674)
chr1 (98-372)||(45231895-45232169)
chr1 (451-792)||(45248430-45248771)
chr1 (513-792)||(45213547-45213826)
chr1 (528-777)||(45206444-45206693)
chr1 (98-231)||(45248092-45248225)
chr1 (791-874)||(45248806-45248890)
chr1 (575-746)||(45233614-45233785)
chr1 (274-329)||(39964515-39964570)
chr1 (274-327)||(39012301-39012354)
chr1 (274-327)||(49101781-49101834)
chr1 (274-329)||(15581152-15581207)
chr1 (274-329)||(37046995-37047050)
chr1 (274-329)||(41470621-41470676)
chr1 (283-341)||(3234323-3234381)
chr1 (276-334)||(44486163-44486221)
chr1 (284-329)||(30043607-30043652)
chr1 (274-329)||(39714789-39714844)
chr1 (276-329)||(2799874-2799928)
chr1 (283-329)||(18928351-18928397)
chr1 (274-336)||(19480537-19480599)
chr1 (285-336)||(9570664-9570716)
chr1 (292-328)||(38939230-38939266)
chr1 (292-327)||(1138600-1138635)
chr1 (191-245)||(38660586-38660641)
chr1 (294-341)||(47360512-47360559)
chr1 (275-329)||(6127997-6128051)
chr1 (275-329)||(34228885-34228939)
chr1 (285-329)||(4824992-4825037)
chr1 (186-247)||(10196210-10196271)
chr1 (274-338)||(33689856-33689921)
chr1 (292-329)||(44417472-44417509)
[»] chr6 (16 HSPs)
chr6 (528-665)||(19278340-19278477)
chr6 (528-665)||(19295745-19295882)
chr6 (274-329)||(6691561-6691616)
chr6 (286-329)||(6384013-6384056)
chr6 (274-328)||(22683-22737)
chr6 (274-327)||(24507548-24507602)
chr6 (274-336)||(28028540-28028602)
chr6 (274-318)||(33560389-33560433)
chr6 (294-329)||(3433612-3433647)
chr6 (106-137)||(33280077-33280108)
chr6 (274-336)||(3869706-3869768)
chr6 (281-342)||(14199944-14200006)
chr6 (274-334)||(3779349-3779410)
chr6 (104-137)||(14415548-14415581)
chr6 (274-327)||(20864218-20864271)
chr6 (274-327)||(24762420-24762473)
[»] chr5 (11 HSPs)
chr5 (274-329)||(16172994-16173049)
chr5 (275-325)||(19373250-19373300)
chr5 (274-329)||(14656654-14656709)
chr5 (274-329)||(15485430-15485484)
chr5 (274-341)||(32340335-32340402)
chr5 (282-328)||(5943893-5943939)
chr5 (274-330)||(16457820-16457877)
chr5 (274-336)||(16436628-16436690)
chr5 (274-329)||(18351784-18351839)
chr5 (283-329)||(16247140-16247186)
chr5 (285-327)||(31669037-31669079)
[»] chr3 (24 HSPs)
chr3 (274-329)||(42799758-42799813)
chr3 (284-336)||(35623270-35623322)
chr3 (274-329)||(11092180-11092235)
chr3 (274-329)||(34844381-34844436)
chr3 (275-329)||(53167802-53167856)
chr3 (274-327)||(46727912-46727965)
chr3 (274-329)||(4252535-4252588)
chr3 (274-329)||(43303768-43303823)
chr3 (287-329)||(26158834-26158876)
chr3 (274-327)||(18316511-18316564)
chr3 (274-327)||(53863880-53863933)
chr3 (281-329)||(10682954-10683002)
chr3 (274-329)||(30311316-30311372)
chr3 (274-329)||(15034355-15034410)
chr3 (274-329)||(40268499-40268554)
chr3 (274-336)||(7207713-7207775)
chr3 (274-327)||(7975428-7975482)
chr3 (285-339)||(28834973-28835027)
chr3 (275-336)||(32651441-32651503)
chr3 (274-320)||(43501977-43502023)
chr3 (284-329)||(44069778-44069824)
chr3 (292-336)||(16900684-16900729)
chr3 (109-154)||(21480021-21480066)
chr3 (285-334)||(51131843-51131892)
[»] chr8 (16 HSPs)
chr8 (551-673)||(41049653-41049775)
chr8 (274-329)||(22268944-22268999)
chr8 (274-329)||(26688875-26688931)
chr8 (274-329)||(6530817-6530872)
chr8 (274-336)||(18897176-18897239)
chr8 (290-341)||(22779681-22779732)
chr8 (274-329)||(34778745-34778800)
chr8 (287-329)||(40136973-40137015)
chr8 (274-329)||(2203502-2203558)
chr8 (274-329)||(3624590-3624646)
chr8 (285-329)||(9126594-9126638)
chr8 (293-328)||(5438450-5438485)
chr8 (274-336)||(28783070-28783133)
chr8 (274-325)||(29206355-29206406)
chr8 (274-329)||(38463892-38463947)
chr8 (292-329)||(34639345-34639382)
[»] chr7 (19 HSPs)
chr7 (287-329)||(21050151-21050193)
chr7 (274-327)||(25956305-25956358)
chr7 (274-329)||(21035179-21035234)
chr7 (278-329)||(8677582-8677633)
chr7 (274-329)||(18847433-18847488)
chr7 (268-329)||(3835081-3835142)
chr7 (274-329)||(5579244-5579300)
chr7 (274-326)||(13585649-13585701)
chr7 (274-329)||(18363706-18363762)
chr7 (282-330)||(19612649-19612697)
chr7 (274-329)||(26459420-26459476)
chr7 (278-329)||(12877167-12877218)
chr7 (274-332)||(25021342-25021401)
chr7 (286-329)||(33128548-33128591)
chr7 (274-329)||(48125185-48125240)
chr7 (274-327)||(5273602-5273656)
chr7 (284-341)||(34634530-34634587)
chr7 (274-323)||(45559210-45559259)
chr7 (299-328)||(46279049-46279078)
[»] chr4 (25 HSPs)
chr4 (274-326)||(29195105-29195157)
chr4 (274-329)||(25414225-25414280)
chr4 (274-329)||(37980158-37980213)
chr4 (299-341)||(5998686-5998728)
chr4 (274-338)||(1074249-1074313)
chr4 (285-329)||(4686138-4686182)
chr4 (284-336)||(17701895-17701947)
chr4 (274-330)||(21344827-21344883)
chr4 (277-329)||(56409964-56410016)
chr4 (274-329)||(25434669-25434723)
chr4 (268-327)||(31141356-31141415)
chr4 (274-329)||(38206136-38206191)
chr4 (274-329)||(42281244-42281299)
chr4 (112-154)||(52199468-52199510)
chr4 (276-325)||(31870292-31870341)
chr4 (274-319)||(39030134-39030179)
chr4 (195-264)||(43109869-43109938)
chr4 (274-329)||(37109361-37109417)
chr4 (274-329)||(37455579-37455635)
chr4 (285-329)||(47183343-47183387)
chr4 (274-329)||(32475105-32475160)
chr4 (303-342)||(40307574-40307613)
chr4 (274-336)||(46545721-46545784)
chr4 (276-329)||(4249189-4249243)
chr4 (292-330)||(41621734-41621772)
[»] chr2 (16 HSPs)
chr2 (274-329)||(41908648-41908704)
chr2 (274-330)||(43963998-43964054)
chr2 (274-329)||(13747644-13747699)
chr2 (274-329)||(26482103-26482158)
chr2 (292-329)||(6099529-6099566)
chr2 (284-329)||(18825361-18825406)
chr2 (274-330)||(30359664-30359721)
chr2 (274-329)||(8192490-8192543)
chr2 (284-328)||(25384556-25384600)
chr2 (274-329)||(42327405-42327461)
chr2 (274-329)||(342405-342460)
chr2 (285-336)||(26176329-26176380)
chr2 (274-327)||(32106576-32106630)
chr2 (274-327)||(42602564-42602618)
chr2 (276-336)||(14500289-14500350)
chr2 (292-329)||(40591204-40591241)
[»] scaffold0337 (1 HSPs)
scaffold0337 (274-327)||(1763-1817)
[»] scaffold0065 (1 HSPs)
scaffold0065 (274-327)||(12199-12253)
[»] scaffold0428 (1 HSPs)
scaffold0428 (106-137)||(14145-14176)
[»] scaffold0189 (1 HSPs)
scaffold0189 (274-329)||(17734-17789)


Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 444 - 874
Target Start/End: Original strand, 45232241 - 45232674
Alignment:
Q  444 tcatttaaaactttaggttaagttagaggaatcctagtgcagttttgcctaaacaaaaatggtcctgggatccaagtcagttccttttcttacatcaaga 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45232241 tcatttaaaactttaggttaagttagaggaatcctagtgcagttttgcctaaacaaaaatggtcctgggatccaagtcaattccttttcttacatcaaga 45232340  T
Q  544 tgttcaatggaagaccagaggaattaaattcggatgcaaatttcttgacagattccaatgaactgagatctaactccatgacatcaattttagctgaggg 643  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45232341 tgttcaatggaagaccagaggaattaaattcggatgcaaatttcttgacagattccaatgaactgagatctaactccatgacatcaattttagctgaggg 45232440  T
Q  644 aatctccttaagtattgcttctttgatatcattagcagcaaccttatttctaacagccacaatcacatggacaccacgcaaagcaagaacacgcatagtc 743  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45232441 aatctccttaagtattgcttctttgatatcattagcagcaaccttatttctaacagccacaatcacatggacaccacgcaaagcaagaacacgcatagtc 45232540  T
Q  744 tcaactccaataccactggatgctcctgttaccataccatcatatccatgtaaagtcacac---agaatacaaacaaataaatcctgactatgcaaattc 840  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  45232541 tcaactccaataccactggatgctcctgttaccatacaatcatatccatgtaaagtcacacagaagaatacaaacaaataaatcctgactatgcaaattc 45232640  T
Q  841 agcagcaataatcttgaagttaaattatagagtc 874  Q
    ||||||||||||||||||||||||||||||||||    
T  45232641 agcagcaataatcttgaagttaaattatagagtc 45232674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 98 - 372
Target Start/End: Original strand, 45231895 - 45232169
Alignment:
Q  98 ctgcacatgggtcctttaacttaatttaaagtttcaaacacgtcttttatctttattcccgtgtcaagttagccctttatatttacagcgttcaactaac 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45231895 ctgcacatgggtcctttaacttaatttaaagtttcaaacacgtcttttatctttattcctgtgtcaagttagccctttatatttacagcgttcaactaac 45231994  T
Q  198 tttcattcttagtttacttctgttacaaatttgtttacacgatcattgaacaatatacgataaggaaatccccagcggttggcctagtggtgtaggcttg 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  45231995 tttcattcttagtttacttctgttacaaatttgtttacacgatcattgaacaatatacgataaggaaatccccagcggttggcctagtggtgtaggctta 45232094  T
Q  298 agaccttggagtgtgctcctctcaaggtctcatattcgaatccttatgtgggctagtccataaagagtttttctg 372  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45232095 agaccttggagtgcgctcctctcaaggtctcatattcgaatccttatgtgggctagtccataaagagtttttctg 45232169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 451 - 792
Target Start/End: Original strand, 45248430 - 45248771
Alignment:
Q  451 aaactttaggttaagttagaggaatcctagtgcagttttgcctaaacaaaaatggtcctgggatccaagtcagttccttttcttacatcaagatgttcaa 550  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||| ||  ||||||||||||||||||||||||||||    
T  45248430 aaactttaaattaagttagaggaatcctagtgcagttttgcctaaataaagatggtacagggatccatgttggttccttttcttacatcaagatgttcaa 45248529  T
Q  551 tggaagaccagaggaattaaattcggatgcaaatttcttgacagattccaatgaactgagatctaactccatgacatcaattttagctgagggaatctcc 650  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  45248530 tggaagaccagaggaattaaattctgatgcaaattttttgacagattccaatgaactgagatctaactccatgacatcaactttagccgagggaatctcc 45248629  T
Q  651 ttaagtattgcttctttgatatcattagcagcaaccttatttctaacagccacaatcacatggacaccacgcaaagcaagaacacgcatagtctcaactc 750  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  45248630 ttaagtattgcttcattgatatcattagcagcaaccttatttcgaacagccataatcacatggacaccacgcaaagcaagaacacgcgtagtctcaactc 45248729  T
Q  751 caataccactggatgctcctgttaccataccatcatatccat 792  Q
    |||||||||||| ||||||||||| |||  ||||||||||||    
T  45248730 caataccactggttgctcctgttaacatgtcatcatatccat 45248771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 513 - 792
Target Start/End: Original strand, 45213547 - 45213826
Alignment:
Q  513 atccaagtcagttccttttcttacatcaagatgttcaatggaagaccagaggaattaaattcggatgcaaatttcttgacagattccaatgaactgagat 612  Q
    ||||| |||| || || |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45213547 atccatgtcactttctcttcttacatcaatatgttcaacggaagaccagaggaattaaattcggatgcaaatttcttgacagattccaatgaactgagat 45213646  T
Q  613 ctaactccatgacatcaattttagctgagggaatctccttaagtattgcttctttgatatcattagcagcaaccttatttctaacagccacaatcacatg 712  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||| || ||| |||||||  |||||||||||||||||||| |||||||||    
T  45213647 ctaactccatgacatcaatttttgctgagggaatctctttaagtattgcttctctggtattattagcattaaccttatttctaacagccataatcacatg 45213746  T
Q  713 gacaccacgcaaagcaagaacacgcatagtctcaactccaataccactggatgctcctgttaccataccatcatatccat 792  Q
    ||||||| | ||||||||||||||| ||||||||   ||||||||||||||||||||||||| |||||||||||||||||    
T  45213747 gacaccatgtaaagcaagaacacgcgtagtctcagtgccaataccactggatgctcctgttaacataccatcatatccat 45213826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 528 - 777
Target Start/End: Original strand, 45206444 - 45206693
Alignment:
Q  528 ttttcttacatcaagatgttcaatggaagaccagaggaattaaattcggatgcaaatttcttgacagattccaatgaactgagatctaactccatgacat 627  Q
    |||||||||||||||||||||| |||| ||||||| |||||| | || |||||||||||||||||||| |||||||| |||||||||||||||||| |||    
T  45206444 ttttcttacatcaagatgttcagtggacgaccagaagaattatactcagatgcaaatttcttgacagagtccaatgagctgagatctaactccatggcat 45206543  T
Q  628 caattttagctgagggaatctccttaagtattgcttctttgatatcattagcagcaaccttatttctaacagccacaatcacatggacaccacgcaaagc 727  Q
    ||| ||| ||||||||||| ||||| |||||||  ||||||| ||| ||||||||||||   ||||| ||| ||| ||||||||| ||||| ||||||||    
T  45206544 caagtttggctgagggaatgtccttgagtattgtatctttgacatctttagcagcaaccaagtttctcacacccataatcacatgcacaccgcgcaaagc 45206643  T
Q  728 aagaacacgcatagtctcaactccaataccactggatgctcctgttacca 777  Q
    ||| |||||   ||||||| | ||||| || |||||||||||||||||||    
T  45206644 aaggacacgagcagtctcagcgccaatgccgctggatgctcctgttacca 45206693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 45248092 - 45248225
Alignment:
Q  98 ctgcacatgggtcctttaacttaatttaaagtttcaaacacgtcttttatctttattcccgtgtcaagttagccctttatatttacagcgttcaactaac 197  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| ||||    |||||||||||    
T  45248092 ctgcacctgggtctgttaacttaatttaaagtttcaaacacgtcttttatctttttttctgtgtcaagttagccttttatctttatcctgttcaactaac 45248191  T
Q  198 tttcattcttagtttacttctgttacaaatttgt 231  Q
    ||||||||||||| ||||||||| ||||||||||    
T  45248192 tttcattcttagtatacttctgtaacaaatttgt 45248225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 791 - 874
Target Start/End: Original strand, 45248806 - 45248890
Alignment:
Q  791 atgtaaagtcacacagaatacaaacaaataaatcctgactatgcaaatt-cagcagcaataatcttgaagttaaattatagagtc 874  Q
    ||||||| |||||||||||| ||||||||||||  |||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  45248806 atgtaaaatcacacagaatataaacaaataaattttgactatgaaaatttcagcagcaataatcttgaagttaaattatagagtc 45248890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 575 - 746
Target Start/End: Original strand, 45233614 - 45233785
Alignment:
Q  575 ggatgcaaatttcttgacagattccaatgaactgagatctaactccatgacatcaattttagctgagggaatctccttaagtattgcttctttgatatca 674  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||||||| ||||| |||||| |||||||| ||||| | ||||   ||||||| |||     
T  45233614 ggatgcaaatttcttgacagaatccaatgagttgagatctaactccatgatatcaagtttagcagagggaatgtccttgactattatatctttgacatct 45233713  T
Q  675 ttagcagcaaccttatttctaacagccacaatcacatggacaccacgcaaagcaagaacacgcatagtctca 746  Q
    ||||| |||||  ||||||| | | ||| ||||||||| ||||   ||||| |||| |||||  ||||||||    
T  45233714 ttagcggcaactatatttctcatacccataatcacatgaacactgtgcaaaacaaggacacgagtagtctca 45233785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 39964515 - 39964570
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  39964515 ggttggcctagaggtgttggcttgcgaccttggagtgtgctcctctcaaggtctca 39964570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 39012301 - 39012354
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtct 327  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||||||||    
T  39012301 ggttggcctagtggtgttggcttgggaccttggagtgtgctcttctcaaggtct 39012354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 49101834 - 49101781
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtct 327  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  49101834 ggttggcctagtgttgttggcttcagaccttggagtgtgctcctctcaaggtct 49101781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 15581207 - 15581152
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||| |||||||||    
T  15581207 ggttggcctggtggtgttggcttgggaccttggagtgtgctcctctaaaggtctca 15581152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 37046995 - 37047050
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||| || ||||||| |||||| |||||||||||||||||||||||||||||||    
T  37046995 ggttggtctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtctca 37047050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 41470676 - 41470621
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||  ||||||| |||||||||||||||||| |||||||||||||||||||    
T  41470676 ggttggcccggtggtgttggcttgagaccttggagtatgctcctctcaaggtctca 41470621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 3234323 - 3234381
Alignment:
Q  283 agtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcatattcgaatcct 341  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||||  ||||||||||    
T  3234323 agtggtgtaggcttgagaccttgaagtatgctcctctcgaggtctcaagttcgaatcct 3234381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 44486221 - 44486163
Alignment:
Q  276 ttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcatattc 334  Q
    ||||||||||||||| || |||  |||||||||||||||||||||||||||||| ||||    
T  44486221 ttggcctagtggtgttggtttggaaccttggagtgtgctcctctcaaggtctcaaattc 44486163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 284 - 329
Target Start/End: Complemental strand, 30043652 - 30043607
Alignment:
Q  284 gtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||||||||||||||||||||||||| || |||||||||||    
T  30043652 gtggtgtaggcttgagaccttggagtgtgcttctatcaaggtctca 30043607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 39714844 - 39714789
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||| |||||| || |||||| || ||||||||||||||||||||||||||||    
T  39714844 ggttggcatagtggcgttggcttgggatcttggagtgtgctcctctcaaggtctca 39714789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 2799874 - 2799928
Alignment:
Q  276 ttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctca 329  Q
    ||||||||||||| ||||||||||| || ||||||||||||| ||||||||||||    
T  2799874 ttggcctagtggtataggcttgagatctgggagtgtgctcctcctcaaggtctca 2799928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 18928351 - 18928397
Alignment:
Q  283 agtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||||| |||||||||||||  |||||||||||||||||||||||    
T  18928351 agtggtgttggcttgagaccttaaagtgtgctcctctcaaggtctca 18928397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 19480537 - 19480599
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcatattcga 336  Q
    |||||||||  |||||| | |||| || |||||||||||||||||||||||||||| ||||||    
T  19480537 ggttggccttatggtgttgacttgggatcttggagtgtgctcctctcaaggtctcacattcga 19480599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 9570664 - 9570716
Alignment:
Q  285 tggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctcatattcga 336  Q
    |||||| |||||||||||||||||||||||| | |||||||||||| ||||||    
T  9570664 tggtgttggcttgagaccttggagtgtgctcttcctcaaggtctcagattcga 9570716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 38939230 - 38939266
Alignment:
Q  292 ggcttgagaccttggagtgtgctcctctcaaggtctc 328  Q
    |||||| ||||||||||||||||||||||||||||||    
T  38939230 ggcttgggaccttggagtgtgctcctctcaaggtctc 38939266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 327
Target Start/End: Original strand, 1138600 - 1138635
Alignment:
Q  292 ggcttgagaccttggagtgtgctcctctcaaggtct 327  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1138600 ggcttgagatcttggagtgtgctcctctcaaggtct 1138635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 38660586 - 38660641
Alignment:
Q  191 aactaactttcattcttagtttac-ttctgttacaaatttgtttacacgatcattg 245  Q
    |||||||||||||||||||| ||| || |||||||||||||| |||| ||||||||    
T  38660586 aactaactttcattcttagtgtactttttgttacaaatttgtgtacaagatcattg 38660641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 47360559 - 47360512
Alignment:
Q  294 cttgagaccttggagtgtgctcctctcaaggtctcatattcgaatcct 341  Q
    |||| ||||||||||||||||||||||||| |||||  ||||||||||    
T  47360559 cttgggaccttggagtgtgctcctctcaagatctcaggttcgaatcct 47360512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 275 - 329
Target Start/End: Complemental strand, 6128051 - 6127997
Alignment:
Q  275 gttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||| || ||||||| || ||| |||||||||| ||||||||||||||||||||    
T  6128051 gttggtctggtggtgttggtttgggaccttggagcgtgctcctctcaaggtctca 6127997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 275 - 329
Target Start/End: Original strand, 34228885 - 34228939
Alignment:
Q  275 gttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||| || ||||||| |||||| ||||| |||||||| ||||||||||||||||    
T  34228885 gttggtctggtggtgttggcttgggacctcggagtgtgttcctctcaaggtctca 34228939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 4824992 - 4825037
Alignment:
Q  285 tggtgtaggcttgagaccttggagtgtgctcctc-tcaaggtctca 329  Q
    |||||| |||||| |||||||||||||||||||| |||||||||||    
T  4824992 tggtgttggcttgggaccttggagtgtgctcctcttcaaggtctca 4825037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 10196210 - 10196271
Alignment:
Q  186 cgttcaactaactttcattcttagtttacttctgttacaaatttgtttacacgatcattgaa 247  Q
    |||| ||| |||||||||| |||||  ||||||||||||||||||| |||| ||| ||||||    
T  10196210 cgttgaaccaactttcatttttagtccacttctgttacaaatttgtgtacatgataattgaa 10196271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 33689856 - 33689921
Alignment:
Q  274 ggttggcctagtggtgtaggctt-gagaccttggagtgtgctcctctcaaggtctcatattcgaat 338  Q
    ||||||||| ||||||||| ||| | ||||||||||||||| |||| ||||||||||  |||||||    
T  33689856 ggttggcctggtggtgtagtctttgggaccttggagtgtgcacctcacaaggtctcagtttcgaat 33689921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 44417509 - 44417472
Alignment:
Q  292 ggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  44417509 ggcttgggaccttggagtgtgctgctctcaaggtctca 44417472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 6e-24; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 528 - 665
Target Start/End: Original strand, 19278340 - 19278477
Alignment:
Q  528 ttttcttacatcaagatgttcaatggaagaccagaggaattaaattcggatgcaaatttcttgacagattccaatgaactgagatctaactccatgacat 627  Q
    ||||||||||| |  |||||||||||||||  ||||||||| ||||| |||||||||||  | |||||| ||| |||||| | |||||||||||| ||||    
T  19278340 ttttcttacatgagaatgttcaatggaagagaagaggaattgaattctgatgcaaattttctaacagatgccattgaacttaaatctaactccattacat 19278439  T
Q  628 caattttagctgagggaatctccttaagtattgcttct 665  Q
    ||| |||||||   |||||||||||||||||| |||||    
T  19278440 caactttagctttaggaatctccttaagtatttcttct 19278477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 528 - 665
Target Start/End: Original strand, 19295745 - 19295882
Alignment:
Q  528 ttttcttacatcaagatgttcaatggaagaccagaggaattaaattcggatgcaaatttcttgacagattccaatgaactgagatctaactccatgacat 627  Q
    ||||||||||| |  |||||||||||||||  ||||||||| ||||| |||||||||||  | |||||| ||| |||||| | |||||||||||| |||     
T  19295745 ttttcttacatgagaatgttcaatggaagagaagaggaattgaattctgatgcaaattttctaacagatgccattgaacttaaatctaactccatcacac 19295844  T
Q  628 caattttagctgagggaatctccttaagtattgcttct 665  Q
     || |||||||   |||||||||||||||||| |||||    
T  19295845 taactttagctttaggaatctccttaagtatttcttct 19295882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 6691616 - 6691561
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||||    
T  6691616 ggttggcctggtggtgttgactttagaccttggagtgtgctcctctcaaggtctca 6691561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 286 - 329
Target Start/End: Complemental strand, 6384056 - 6384013
Alignment:
Q  286 ggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||| |||||| |||||||||||||||||||||||||||||||    
T  6384056 ggtgttggcttgggaccttggagtgtgctcctctcaaggtctca 6384013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 328
Target Start/End: Complemental strand, 22737 - 22683
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctc 328  Q
    |||||| |||||||| | |||||| ||||||||||||||||| ||||||||||||    
T  22737 ggttgggctagtggttttggcttgggaccttggagtgtgctcttctcaaggtctc 22683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 24507602 - 24507548
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtct 327  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||    
T  24507602 ggttggcctagtggtgttggcttgggaccttggagtttgctcctcctcaaggtct 24507548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 28028540 - 28028602
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcatattcga 336  Q
    ||||||||| ||||||| | |||| |||||| ||||| ||||||||||||||||||| |||||    
T  28028540 ggttggcctggtggtgttgacttgggacctttgagtgagctcctctcaaggtctcatgttcga 28028602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 33560389 - 33560433
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctc 318  Q
    ||||| ||||||||||| ||||||||||||||||||||| |||||    
T  33560389 ggttgtcctagtggtgttggcttgagaccttggagtgtgatcctc 33560433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 329
Target Start/End: Complemental strand, 3433647 - 3433612
Alignment:
Q  294 cttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||||||||||||| |||||||||||||||||||    
T  3433647 cttgagaccttggagtttgctcctctcaaggtctca 3433612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 137
Target Start/End: Complemental strand, 33280108 - 33280077
Alignment:
Q  106 gggtcctttaacttaatttaaagtttcaaaca 137  Q
    ||||||||||||||||||||||||||||||||    
T  33280108 gggtcctttaacttaatttaaagtttcaaaca 33280077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 3869706 - 3869768
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcatattcga 336  Q
    |||||||||  |||||| ||||||||| ||| ||||||||| || |||||||||||| |||||    
T  3869706 ggttggcctgatggtgttggcttgagatcttcgagtgtgcttctatcaaggtctcatgttcga 3869768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 281 - 342
Target Start/End: Complemental strand, 14200006 - 14199944
Alignment:
Q  281 ctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctcatattcgaatcctt 342  Q
    |||| ||| |||||||||||| | ||||||||||||| |||||||||||| |||||| |||||    
T  14200006 ctagaggtataggcttgagacttgggagtgtgctcctcctcaaggtctcagattcgattcctt 14199944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 3779349 - 3779410
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcc-tctcaaggtctcatattc 334  Q
    ||||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||| ||||    
T  3779349 ggttgacctagtggtattggcttgagacttgggagtgtgctccttctcaaggtctcagattc 3779410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 137
Target Start/End: Complemental strand, 14415581 - 14415548
Alignment:
Q  104 atgggtcctttaacttaatttaaagtttcaaaca 137  Q
    |||||| |||||||||||||||||||||||||||    
T  14415581 atgggttctttaacttaatttaaagtttcaaaca 14415548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 20864271 - 20864218
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtct 327  Q
    |||| |||| ||||||| |||||  |||||||||||||||||||||||| ||||    
T  20864271 ggttagcctggtggtgttggcttaggaccttggagtgtgctcctctcaatgtct 20864218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 24762473 - 24762420
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtct 327  Q
    |||||| ||| |||||| |||||| |||||||| |||||||||||| |||||||    
T  24762473 ggttggtctaatggtgttggcttgggaccttggtgtgtgctcctcttaaggtct 24762420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 16173049 - 16172994
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||||||||||||    
T  16173049 ggttggcctggtagtgttggcttgagaccttggagtgtgctcctctcaaggtctca 16172994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 19373250 - 19373300
Alignment:
Q  275 gttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggt 325  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  19373250 gttggcctggtggtgttggcttgagaccttggagtgtgctactctcaaggt 19373300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 14656709 - 14656654
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||| ||| || |||| |||||||||||||||||| |||||||||||||||||||    
T  14656709 ggttgacctggttgtgttggcttgagaccttggagtttgctcctctcaaggtctca 14656654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 15485484 - 15485430
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||||| || || |||||| |||||||||||||||||||||||||||||||    
T  15485484 ggttggcctagcgg-gttggcttgggaccttggagtgtgctcctctcaaggtctca 15485430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 32340402 - 32340335
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcatattcgaatcct 341  Q
    |||||| || |||| | ||||||| ||||||||||||||||||||||||||||| |  ||||||||||    
T  32340402 ggttggtcttgtggggcaggcttgggaccttggagtgtgctcctctcaaggtcttaggttcgaatcct 32340335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 282 - 328
Target Start/End: Complemental strand, 5943939 - 5943893
Alignment:
Q  282 tagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctc 328  Q
    ||||||||| | |||| ||||||||||||||||||||||||||||||    
T  5943939 tagtggtgttgacttgggaccttggagtgtgctcctctcaaggtctc 5943893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 16457820 - 16457877
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctcat 330  Q
    ||||||||| ||||| | |||||| ||||||||||||||||||| |||||||||||||    
T  16457820 ggttggcctggtggtattggcttgggaccttggagtgtgctcctcctcaaggtctcat 16457877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 16436628 - 16436690
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctcatattcga 336  Q
    ||||||||||||||| | |||||| ||| ||||||||||||||| ||||||||||||| |||||    
T  16436628 ggttggcctagtggtattggcttgggac-ttggagtgtgctcctcctcaaggtctcatgttcga 16436690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 18351839 - 18351784
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||| || ||||||||| |||||||||||| ||||||||  |||||||||||||    
T  18351839 ggttggtctggtggtgtagacttgagaccttgaagtgtgcttgtctcaaggtctca 18351784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 16247186 - 16247140
Alignment:
Q  283 agtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||||| |||||| ||||||| ||||||||||| |||||||||||    
T  16247186 agtggtgttggcttgggaccttgcagtgtgctcctatcaaggtctca 16247140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 31669079 - 31669037
Alignment:
Q  285 tggtgtaggcttgagaccttggagtgtgctcctctcaaggtct 327  Q
    |||||| |||||| ||||||||||| |||||||||||||||||    
T  31669079 tggtgttggcttgggaccttggagtctgctcctctcaaggtct 31669037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 42799813 - 42799758
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||    
T  42799813 ggttggcctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtctca 42799758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 35623322 - 35623270
Alignment:
Q  284 gtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcatattcga 336  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  35623322 gtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcatgttcga 35623270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 11092235 - 11092180
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||||||||||| |||||| ||||||| |||||||| ||||||||||||||    
T  11092235 ggttggcctagtggtgttggcttgggaccttgtagtgtgctactctcaaggtctca 11092180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 34844381 - 34844436
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  34844381 ggttgccctggtgttgttggcttgagaccttggagtgtgctcctctcaaggtctca 34844436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 329
Target Start/End: Complemental strand, 53167856 - 53167802
Alignment:
Q  275 gttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||    
T  53167856 gttggcctagcggtgttggcttgagaccatggagtgtgcttctctcaaggtctca 53167802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 46727965 - 46727912
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtct 327  Q
    ||||||||||||| |||  |||||| ||||||||||||||||||||||||||||    
T  46727965 ggttggcctagtgctgttagcttgaaaccttggagtgtgctcctctcaaggtct 46727912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 4252588 - 4252535
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||||||||||||   ||||||||| ||||||||||||||||||||||||||||    
T  4252588 ggttggcctagtggtt--ggcttgagatcttggagtgtgctcctctcaaggtctca 4252535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 43303768 - 43303823
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| ||||||  ||||||||||||||||| ||||||||||| ||||||||    
T  43303768 ggttggcctggtggtgatggcttgagaccttggagcgtgctcctctccaggtctca 43303823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 26158834 - 26158876
Alignment:
Q  287 gtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||| ||||||||| ||||||||||||||||||||||||||||    
T  26158834 gtgttggcttgagatcttggagtgtgctcctctcaaggtctca 26158876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 18316564 - 18316511
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtct 327  Q
    |||||| || ||||||  |||||| |||||||||||||||||||||||||||||    
T  18316564 ggttggtctggtggtgctggcttgggaccttggagtgtgctcctctcaaggtct 18316511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 53863933 - 53863880
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtct 327  Q
    ||||| ||| ||| ||| |||||| |||||||||||||||||||||||||||||    
T  53863933 ggttgtcctggtgatgttggcttgggaccttggagtgtgctcctctcaaggtct 53863880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 10683002 - 10682954
Alignment:
Q  281 ctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||||| | ||||||||||||||||||||||| ||||||| ||||||    
T  10683002 ctagtggtattggcttgagaccttggagtgtgcttctctcaaagtctca 10682954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 30311316 - 30311372
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctca 329  Q
    ||||||||||||||| |||||||| || || ||||||||||||| ||||||||||||    
T  30311316 ggttggcctagtggtataggcttgggatctgggagtgtgctcctcctcaaggtctca 30311372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 15034355 - 15034410
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| ||||||| | |||| |||||||||| ||| ||||||||||||||||    
T  15034355 ggttggcctggtggtgttgccttgggaccttggagggtgatcctctcaaggtctca 15034410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 40268499 - 40268554
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||| |||| ||||||| |||||| |||||||||||| |||||||| |||||||||    
T  40268499 ggtttgcctggtggtgttggcttgggaccttggagtgggctcctcttaaggtctca 40268554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 7207713 - 7207775
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcatattcga 336  Q
    ||||||| | |||||||||  ||| ||||||| ||||||||| ||||||| ||||||||||||    
T  7207713 ggttggcttggtggtgtagtgttgggaccttgaagtgtgctcatctcaagatctcatattcga 7207775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 7975428 - 7975482
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtct 327  Q
    ||||||||||||||| |||||||| || || ||||||||||||| ||||||||||    
T  7975428 ggttggcctagtggtataggcttgggatctgggagtgtgctcctcctcaaggtct 7975482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 28835027 - 28834973
Alignment:
Q  285 tggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcatattcgaatc 339  Q
    |||||| |||||| |||||||||||||  ||||||||||||||||  ||||||||    
T  28835027 tggtgttggcttgtgaccttggagtgtcttcctctcaaggtctcaagttcgaatc 28834973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 32651503 - 32651441
Alignment:
Q  275 gttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctcatattcga 336  Q
    |||||||||||||| | |||||| ||||| ||||||||||||| |||||| ||||| ||||||    
T  32651503 gttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaagatctcagattcga 32651441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 43502023 - 43501977
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctc 320  Q
    |||||||||||||||| |||||||  |||| ||||||||||||||||    
T  43502023 ggttggcctagtggtgaaggcttggaacctaggagtgtgctcctctc 43501977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 44069778 - 44069824
Alignment:
Q  284 gtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctca 329  Q
    ||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  44069778 gtggtgttggcttgagatcttggagtgtgctcctcctcaaggtctca 44069824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 16900729 - 16900684
Alignment:
Q  292 ggcttgagaccttggagtgtgctcctc-tcaaggtctcatattcga 336  Q
    |||||| |||||||||||||||||||| |||||||||||| |||||    
T  16900729 ggcttgggaccttggagtgtgctcctcgtcaaggtctcatgttcga 16900684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 21480021 - 21480066
Alignment:
Q  109 tcctttaacttaatttaaagtttcaaacacgtcttttatctttatt 154  Q
    ||||||||||| |||||||||||||||||| || ||||| ||||||    
T  21480021 tcctttaacttgatttaaagtttcaaacacatcctttatttttatt 21480066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 51131843 - 51131892
Alignment:
Q  285 tggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcatattc 334  Q
    |||||| |||||| | ||||||||||||||||||| || |||||||||||    
T  51131843 tggtgttggcttggggccttggagtgtgctcctcttaaagtctcatattc 51131892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 551 - 673
Target Start/End: Complemental strand, 41049775 - 41049653
Alignment:
Q  551 tggaagaccagaggaattaaattcggatgcaaatttcttgacagattccaatgaactgagatctaactccatgacatcaattttagctgagggaatctcc 650  Q
    ||||||||| ||||||||||| || | ||| |||||| | |||||| |||| || || ||||||||||| |  |||||||| ||||| |  ||||| |||    
T  41049775 tggaagaccggaggaattaaaatctgctgcgaatttcctaacagatgccaaagagctaagatctaactcaaaaacatcaatcttagcagctggaatttcc 41049676  T
Q  651 ttaagtattgcttctttgatatc 673  Q
    |||||||||| ||||||||||||    
T  41049675 ttaagtattgattctttgatatc 41049653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 22268999 - 22268944
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| ||||||| |||||| ||||||||||||||||| |||||||||||||    
T  22268999 ggttggcctggtggtgttggcttgggaccttggagtgtgctcttctcaaggtctca 22268944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 26688875 - 26688931
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctca 329  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  26688875 ggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctca 26688931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 6530817 - 6530872
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| ||||||| |||||| ||||| |||||||||||||||||| ||||||    
T  6530817 ggttggcctggtggtgttggcttgggacctaggagtgtgctcctctcaatgtctca 6530872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 18897176 - 18897239
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctcatattcga 336  Q
    ||||||||||||||||| || ||| |||||| |||||||||||| ||||||||||||| |||||    
T  18897176 ggttggcctagtggtgttggtttgggaccttagagtgtgctcctcctcaaggtctcatgttcga 18897239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 22779681 - 22779732
Alignment:
Q  290 taggcttgagaccttggagtgtgctcctctcaaggtctcatattcgaatcct 341  Q
    |||||||| ||||||||| |||||||||||||||||||||  ||||||||||    
T  22779681 taggcttgggaccttggaatgtgctcctctcaaggtctcaggttcgaatcct 22779732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 34778745 - 34778800
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||| |||| ||||||| |||||||||||||| ||||||||||| |||||||||||    
T  34778745 ggtttgcctggtggtgttggcttgagaccttgcagtgtgctcctttcaaggtctca 34778800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 40137015 - 40136973
Alignment:
Q  287 gtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  40137015 gtgttggcttgggaccttggagtgtgctcctctcaaggtctca 40136973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 2203502 - 2203558
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctca 329  Q
    ||||||||||||||| | |||||| ||||| ||||||||||||| ||||||||||||    
T  2203502 ggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctca 2203558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 3624590 - 3624646
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctc-tcaaggtctca 329  Q
    ||||||||||||||| | |||||| ||||| |||||||||||||| |||||||||||    
T  3624590 ggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctca 3624646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 9126638 - 9126594
Alignment:
Q  285 tggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||| |||||| |||||||||||||||||||||||||| ||||    
T  9126638 tggtgtcggcttgggaccttggagtgtgctcctctcaaggactca 9126594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 328
Target Start/End: Complemental strand, 5438485 - 5438450
Alignment:
Q  293 gcttgagaccttggagtgtgctcctctcaaggtctc 328  Q
    ||||| ||||||||||||||||||||||||||||||    
T  5438485 gcttgggaccttggagtgtgctcctctcaaggtctc 5438450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 28783070 - 28783133
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctcatattcga 336  Q
    ||||||| | ||||| | |||||||||||| ||||||||||||| ||||||||||||| |||||    
T  28783070 ggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgttcga 28783133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 29206355 - 29206406
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggt 325  Q
    ||||||||| ||||||| ||||||  ||||||| ||||||||||||||||||    
T  29206355 ggttggcctggtggtgtgggcttggtaccttggggtgtgctcctctcaaggt 29206406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 38463892 - 38463947
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| |||| | ||||||| ||||| |||||||||||||||| ||||||||    
T  38463892 ggttggcctggtggcgaaggcttgggacctaggagtgtgctcctctctaggtctca 38463947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 34639382 - 34639345
Alignment:
Q  292 ggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||| || ||||||||||||||||||||||||||||    
T  34639382 ggcttgggatcttggagtgtgctcctctcaaggtctca 34639345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 21050193 - 21050151
Alignment:
Q  287 gtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21050193 gtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 21050151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 25956358 - 25956305
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtct 327  Q
    ||||||||||||||| | |||||| |||||||||||||||||||||||||||||    
T  25956358 ggttggcctagtggtattggcttgggaccttggagtgtgctcctctcaaggtct 25956305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 21035234 - 21035179
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||    
T  21035234 ggttggcctcgttgtgtaagcttgagaccttggagtgtgctcctctcaaggactca 21035179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 8677633 - 8677582
Alignment:
Q  278 ggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||| |||||||||||||||||||| |||| ||||||||||| ||||||||    
T  8677633 ggcctggtggtgtaggcttgagacctaggagggtgctcctctctaggtctca 8677582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 18847488 - 18847433
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| ||||||| ||||||||| ||| |||||||||||||||||| |||||    
T  18847488 ggttggcctggtggtgttggcttgagatcttcgagtgtgctcctctcaagatctca 18847433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 3835142 - 3835081
Alignment:
Q  268 cccagcggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||| |||||||||||||||| ||||||| ||| | |||||||||| ||||| ||||||||    
T  3835142 cccaggggttggcctagtggtgaaggcttgggacttaggagtgtgcttctctctaggtctca 3835081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 5579300 - 5579244
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctca 329  Q
    ||||| ||| ||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  5579300 ggttgacctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctca 5579244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 13585649 - 13585701
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtc 326  Q
    |||||| || ||| |||||| ||||||||||||||| ||||||||||||||||    
T  13585649 ggttggtctggtgatgtaggtttgagaccttggagtttgctcctctcaaggtc 13585701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 18363706 - 18363762
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctca 329  Q
    ||||||||||||||| |||||||||||  | ||||||||||||| ||||||||||||    
T  18363706 ggttggcctagtggtataggcttgagatttgggagtgtgctcctcctcaaggtctca 18363762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 19612697 - 19612649
Alignment:
Q  282 tagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcat 330  Q
    ||||||||| |||||| || |||| ||||||||||||||||||||||||    
T  19612697 tagtggtgttggcttgggatcttgaagtgtgctcctctcaaggtctcat 19612649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 26459476 - 26459420
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctca 329  Q
    ||||||||||||||| | |||||| ||||| ||||||||||||| ||||||||||||    
T  26459476 ggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctca 26459420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 12877167 - 12877218
Alignment:
Q  278 ggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||||| | |||||| ||||||||||| |||||||||||| ||||||    
T  12877167 ggcctagtggttttggcttgggaccttggagtttgctcctctcaatgtctca 12877218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 25021401 - 25021342
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctcatat 332  Q
    ||||||||||||||| | |||||| ||||| ||||||||||||| ||||| |||||||||    
T  25021401 ggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctcatat 25021342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 329
Target Start/End: Complemental strand, 33128591 - 33128548
Alignment:
Q  286 ggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||    
T  33128591 ggtgtagccttgagaccttggagtgtgatcctctcatggtctca 33128548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 48125240 - 48125185
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||| || ||||||| |||||| ||||||||||||||||||||  |||||||||    
T  48125240 ggttggtctggtggtgttggcttgggaccttggagtgtgctcctccgaaggtctca 48125185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 5273656 - 5273602
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtct 327  Q
    ||||||||| ||||||| |||||| |||||| |||||||||||| ||||||||||    
T  5273656 ggttggcctggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtct 5273602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 34634587 - 34634530
Alignment:
Q  284 gtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcatattcgaatcct 341  Q
    ||||| ||||||||||||||  |||||| |||||||| |||||||| ||| |||||||    
T  34634587 gtggtataggcttgagacctaagagtgtcctcctctctaggtctcaaatttgaatcct 34634530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 45559210 - 45559259
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaag 323  Q
    ||||||||||||||| | ||||||  |||||||||||||||| |||||||    
T  45559210 ggttggcctagtggtattggcttggaaccttggagtgtgctcatctcaag 45559259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 328
Target Start/End: Original strand, 46279049 - 46279078
Alignment:
Q  299 gaccttggagtgtgctcctctcaaggtctc 328  Q
    ||||||||||||||||||||||||||||||    
T  46279049 gaccttggagtgtgctcctctcaaggtctc 46279078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 29195105 - 29195157
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtc 326  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||||||||||    
T  29195105 ggttggcctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtc 29195157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 25414280 - 25414225
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||||| ||||||    
T  25414280 ggttggccttctggtgttggcttgagaccttggagtgtgctcctctcaaagtctca 25414225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 37980213 - 37980158
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| ||| ||| |||||| |||||||||||||||||||||||||||||||    
T  37980213 ggttggcctggtgatgttggcttgggaccttggagtgtgctcctctcaaggtctca 37980158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 5998728 - 5998686
Alignment:
Q  299 gaccttggagtgtgctcctctcaaggtctcatattcgaatcct 341  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  5998728 gaccttggagtgtgctcctctcaaggtctcacattcgaatcct 5998686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 1074249 - 1074313
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcatattcgaat 338  Q
    ||||||||| |||||| ||||||||||||| |||||||||||||||| || |||||  |||||||    
T  1074249 ggttggcctggtggtgaaggcttgagacctaggagtgtgctcctctctagttctcagcttcgaat 1074313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 4686182 - 4686138
Alignment:
Q  285 tggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||    
T  4686182 tggtgttggcttgagaccttggagtgtgctcctctcaatgtctca 4686138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 17701895 - 17701947
Alignment:
Q  284 gtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcatattcga 336  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||||| ||||||    
T  17701895 gtggtgttggcttgagactttggaatgtgctcctctcaaggtctcagattcga 17701947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 21344827 - 21344883
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcat 330  Q
    |||||||||  || ||| |||||| ||||||||||||||||||||||||||||||||    
T  21344827 ggttggcctgatgatgttggcttgggaccttggagtgtgctcctctcaaggtctcat 21344883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 56409964 - 56410016
Alignment:
Q  277 tggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||| ||| ||| |||||| |||||||||||||||||||||||||||||||    
T  56409964 tggcctggtgctgttggcttgggaccttggagtgtgctcctctcaaggtctca 56410016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 25434723 - 25434669
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| ||||||| |||||| |||||||||||||||| ||||||||||||||    
T  25434723 ggttggcctggtggtgt-ggcttgggaccttggagtgtgcttctctcaaggtctca 25434669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 31141415 - 31141356
Alignment:
Q  268 cccagcggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtct 327  Q
    ||||| |||| ||| | ||||||| ||||| |||||||||||||||||||||||||||||    
T  31141415 cccaggggtttgcccaatggtgtaagcttgggaccttggagtgtgctcctctcaaggtct 31141356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 38206191 - 38206136
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||| ||| ||||||  |||||| |||||||||||||||||||||||||||||||    
T  38206191 ggttgacctggtggtgctggcttgggaccttggagtgtgctcctctcaaggtctca 38206136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 42281299 - 42281244
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||  ||||||| |||||| ||||||| |||||||||||||||||||||||    
T  42281299 ggttggccaggtggtgttggcttgggaccttgtagtgtgctcctctcaaggtctca 42281244  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 52199468 - 52199510
Alignment:
Q  112 tttaacttaatttaaagtttcaaacacgtcttttatctttatt 154  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  52199468 tttaatttaatttaaagtttcaaacatgtcttttatctttatt 52199510  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 276 - 325
Target Start/End: Original strand, 31870292 - 31870341
Alignment:
Q  276 ttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggt 325  Q
    |||||||||| |||  |||||||||||||||| |||||||||||||||||    
T  31870292 ttggcctagtagtgctggcttgagaccttggactgtgctcctctcaaggt 31870341  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 39030179 - 39030134
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctct 319  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||    
T  39030179 ggttggcctggtggtgttggcttgggaccttggagtgtgctcctct 39030134  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 43109869 - 43109938
Alignment:
Q  195 aactttcattcttagtttacttctgttacaaatttgtttacacgatcattgaacaatatacgataaggaa 264  Q
    |||||||||||||| |  |||| |||||||||||||| |||| || ||||||| ||||||| ||||||||    
T  43109869 aactttcattcttaatccacttatgttacaaatttgtgtacatgaacattgaataatatactataaggaa 43109938  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 37109417 - 37109361
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctca 329  Q
    ||||||||||||||| | |||||| ||||| ||||||||||||| ||||||||||||    
T  37109417 ggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctca 37109361  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 37455579 - 37455635
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagacctt-ggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| ||||||| |||||| |||||| ||||| |||||||||||||||||||    
T  37455579 ggttggcctggtggtgttggcttgggacctttggagtatgctcctctcaaggtctca 37455635  T

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Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 47183343 - 47183387
Alignment:
Q  285 tggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||| ||||||||||||||||||||| |||||||||| |||||    
T  47183343 tggtgttggcttgagaccttggagtgtgatcctctcaagatctca 47183387  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 32475160 - 32475105
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||| |||||||||| |||||| |||| |||||||  |||||||||||||||||    
T  32475160 ggttggtctagtggtgttggcttgggaccctggagtgaactcctctcaaggtctca 32475105  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 342
Target Start/End: Original strand, 40307574 - 40307613
Alignment:
Q  303 ttggagtgtgctcctctcaaggtctcatattcgaatcctt 342  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  40307574 ttggagtgtgctcctctcaaggtctcatatttgattcctt 40307613  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 46545721 - 46545784
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctcatattcga 336  Q
    ||||||||||||||| | ||||||||||||  |||||||||||| |||||| ||||| ||||||    
T  46545721 ggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcagattcga 46545784  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 4249189 - 4249243
Alignment:
Q  276 ttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctca 329  Q
    ||||||||||||| |||||||| ||  ||||||||||||||| ||||||||||||    
T  4249189 ttggcctagtggtataggcttgggattttggagtgtgctcctcctcaaggtctca 4249243  T

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Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 41621772 - 41621734
Alignment:
Q  292 ggcttgagaccttggagtgtgctcctctcaaggtctcat 330  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  41621772 ggcttgagatcttggagtttgctcctctcaaggtctcat 41621734  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 41908704 - 41908648
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctca 329  Q
    ||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||    
T  41908704 ggttggcctggtggtgtcggtttgagaccttggagtgtgctcctcctcaaggtctca 41908648  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 43964054 - 43963998
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcat 330  Q
    |||||| ||||| |||| || ||| ||||||||||||||||||||||||||||||||    
T  43964054 ggttggtctagtagtgttggtttgggaccttggagtgtgctcctctcaaggtctcat 43963998  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 13747699 - 13747644
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||| ||||||||| |||||| ||||||||||| |||||||| ||||||||||    
T  13747699 ggttggcttagtggtgttggcttgggaccttggagtatgctcctcccaaggtctca 13747644  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 26482103 - 26482158
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||||||  |||||| |||||| ||||| |||||||||||||||||||||||||    
T  26482103 ggttggcctgatggtgttggcttgggacctaggagtgtgctcctctcaaggtctca 26482158  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 6099566 - 6099529
Alignment:
Q  292 ggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||| |||||||||||||||||||||||||||||||    
T  6099566 ggcttgggaccttggagtgtgctcctctcaaggtctca 6099529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 18825361 - 18825406
Alignment:
Q  284 gtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||| |||||| ||||| |||||||||||||||||||||||||    
T  18825361 gtggtgttggcttgggacctaggagtgtgctcctctcaaggtctca 18825406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 30359664 - 30359721
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctcat 330  Q
    ||||||| | ||||||| |||||| ||||||||||||||||||| |||||||||||||    
T  30359664 ggttggcttggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcat 30359721  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 8192543 - 8192490
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    |||||||||||||||   |||||| || ||||||||||||||||||||||||||||    
T  8192543 ggttggcctagtggtt--ggcttgggatcttggagtgtgctcctctcaaggtctca 8192490  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 25384556 - 25384600
Alignment:
Q  284 gtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctc 328  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||||    
T  25384556 gtggtgttggcttgggaccttggagtgtgctcctctcagggtctc 25384600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 42327461 - 42327405
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctca 329  Q
    ||||||||||||||| | |||||| ||||| ||||||||||||| ||||||||||||    
T  42327461 ggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctca 42327405  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 342405 - 342460
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| ||||||| |||||| ||||||||||||| ||| || ||||||||||    
T  342405 ggttggcctggtggtgttggcttgtgaccttggagtgtactcatcgcaaggtctca 342460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 336
Target Start/End: Complemental strand, 26176380 - 26176329
Alignment:
Q  285 tggtgtaggcttgagaccttggagtgtgctcctctcaaggtctcatattcga 336  Q
    |||||| | |||| |||||||| |||||||||||||||||||||| ||||||    
T  26176380 tggtgttgacttgggaccttggggtgtgctcctctcaaggtctcagattcga 26176329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 32106576 - 32106630
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgct-cctctcaaggtct 327  Q
    ||||||||| ||||||| | |||| |||||||||||||||| |||||||||||||    
T  32106576 ggttggcctggtggtgttgacttgggaccttggagtgtgctccctctcaaggtct 32106630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 42602564 - 42602618
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcc-tctcaaggtct 327  Q
    ||||||||||||||| | |||||| ||||| |||||||||||| |||||||||||    
T  42602564 ggttggcctagtggtattggcttgggacctgggagtgtgctccttctcaaggtct 42602618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 14500289 - 14500350
Alignment:
Q  276 ttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtctcatattcga 336  Q
    ||||||||||||| || |||||||| || ||||||||||||| ||| |||||||| ||||||    
T  14500289 ttggcctagtggtataagcttgagatctgggagtgtgctcctcctctaggtctcagattcga 14500350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 40591204 - 40591241
Alignment:
Q  292 ggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  40591204 ggcttgagatcttggagtgtgctcctctcaaagtctca 40591241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 1763 - 1817
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtct 327  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||    
T  1763 ggttggcctagtggtgttggcttgggaccttggagtttgctcctcctcaaggtct 1817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 12199 - 12253
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcct-ctcaaggtct 327  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||    
T  12199 ggttggcctagtggtgttggcttgggaccttggagtttgctcctcctcaaggtct 12253  T

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Target: scaffold0428 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 137
Target Start/End: Original strand, 14145 - 14176
Alignment:
Q  106 gggtcctttaacttaatttaaagtttcaaaca 137  Q
    ||||||||||||||||||||||||||||||||    
T  14145 gggtcctttaacttaatttaaagtttcaaaca 14176  T

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Target: scaffold0189 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 17789 - 17734
Alignment:
Q  274 ggttggcctagtggtgtaggcttgagaccttggagtgtgctcctctcaaggtctca 329  Q
    ||||||||| ||||| | ||| | |||||||||||||| |||||||||||||||||    
T  17789 ggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctca 17734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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