View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21024_high_1 (Length: 449)
Name: NF21024_high_1
Description: NF21024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21024_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 37704868 - 37704454
Alignment:
| Q |
1 |
cttaaaaaaccgatttgttataattaaataacttaaaagtatcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704868 |
cttaaaaaaccgatttgttataattaaataacttaaaagtctcgtaatttgctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaat |
37704769 |
T |
|
| Q |
101 |
acaattaatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttgaaat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704768 |
acaattaatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttatcacaacttgaaat |
37704669 |
T |
|
| Q |
201 |
aagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704668 |
aagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaat |
37704569 |
T |
|
| Q |
301 |
taatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704568 |
taatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataa |
37704469 |
T |
|
| Q |
401 |
gtcaacctttttggt |
415 |
Q |
| |
|
||||||||||||||| |
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| T |
37704468 |
gtcaacctttttggt |
37704454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 51 - 414
Target Start/End: Complemental strand, 37699349 - 37698974
Alignment:
| Q |
51 |
gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtatttttaagcac |
144 |
Q |
| |
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|||||||||||| ||| || ||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
37699349 |
gctctttaaagtctgttcagttgaagaagtctaagtctccgttgctaaatacaattaatgttgttattattttcttcattttaggtgtatttttaagcaa |
37699250 |
T |
|
| Q |
145 |
attactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-g |
240 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||||||| | |
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| T |
37699249 |
attactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttg |
37699150 |
T |
|
| Q |
241 |
gtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatga |
340 |
Q |
| |
|
|| ||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
37699149 |
gttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatga |
37699050 |
T |
|
| Q |
341 |
aaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
414 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| |||| |||||||| |
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|
| T |
37699049 |
aaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 111 - 415
Target Start/End: Complemental strand, 37437823 - 37437520
Alignment:
| Q |
111 |
ttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
37437823 |
ttattttcttcatttcaggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattc |
37437724 |
T |
|
| Q |
208 |
caactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatat |
306 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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|
| T |
37437723 |
caactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatat |
37437628 |
T |
|
| Q |
307 |
tgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaac |
406 |
Q |
| |
|
||||||||| |||||||||| |||| | |||||||||||| ||||| | |||| ||||||||| |||||| |||||| |||||||||||||||||| |
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| T |
37437627 |
tgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcaga |
37437529 |
T |
|
| Q |
407 |
ctttttggt |
415 |
Q |
| |
|
||||||||| |
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|
| T |
37437528 |
ctttttggt |
37437520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 167 - 415
Target Start/End: Complemental strand, 37698864 - 37698636
Alignment:
| Q |
167 |
taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttag |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||| |||||||| ||||| |||||||| |
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|
| T |
37698864 |
taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttag |
37698765 |
T |
|
| Q |
262 |
tttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaat |
361 |
Q |
| |
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||||| ||||||||||||||| |||||| | |||||||||||||||| |||||||||| |||| | | |||||||| |
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|
| T |
37698764 |
tttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaat |
37698690 |
T |
|
| Q |
362 |
aagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
415 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
37698689 |
aagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 51 - 287
Target Start/End: Original strand, 16840857 - 16841109
Alignment:
| Q |
51 |
gctctttaaagtatgtacatttgaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtat----ttttaa |
140 |
Q |
| |
|
||||||||||||||| | | |||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |||||| |
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|
| T |
16840857 |
gctctttaaagtatggatagttgacgaagtctaagtctccgcttctaaatacatttaatgttgttattattttcttcatttcaggtgtatatatttttaa |
16840956 |
T |
|
| Q |
141 |
gcacattactcactgtgattgctacttaaatgaatttgttatcttat------cacaacttgaaataagattccaactttcgtgctaattacgttcaaaa |
234 |
Q |
| |
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||| |||| ||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |
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|
| T |
16840957 |
gcaaattattcattgtgattggtacttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaa |
16841055 |
T |
|
| Q |
235 |
agtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg |
287 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||| | |||||||||||||| |||| |
|
|
| T |
16841056 |
agtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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