View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21025_low_1 (Length: 673)
Name: NF21025_low_1
Description: NF21025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21025_low_1 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 167 - 665
Target Start/End: Original strand, 441365 - 441859
Alignment:
| Q |
167 |
aatatgcggtttttaattttgtgtgcgttgcggtggtctttgtcattgttattatcatggtggttgtaatgatttgtttgtgtaagaattgaaaagaaat |
266 |
Q |
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| T |
441365 |
aatatgcgggttttaattttgtgtgcgttgcggtggtctttgtcattgttattatcatggtggttgtaatgatttgtttgtgtaagaattgaagagaaat |
441464 |
T |
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| Q |
267 |
gaaatttttggaaatgggggtgagaaccaatggaatggtgatttgataggagtttccgttttttctggtgctaagtcatgcatgcattcttacgtgttac |
366 |
Q |
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| T |
441465 |
gaaatttttggaaatgggggtgagaaccaacggaatggtgatttgataggagtttcagctttttctggtgctaagtcatgcatgcattcttacgtgttac |
441564 |
T |
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| Q |
367 |
tctttttacggtttgtgttttggtttggcaaatttttctccctcgcacannnnnnngctatcaacttctatatttgttcaatttatattttctcttccat |
466 |
Q |
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| T |
441565 |
tcttttgacggtttgtgttttggtttggcaaatttttctccctcgcacatttttttgctatcaacttctatatttgttcaatttatattttctcttctat |
441664 |
T |
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| Q |
467 |
cgatcctttttcatttgtgactacaaactagaaggtaaataagttttgcggttagttatttgcatatgcatgacgacataaagaatctaaatataggtga |
566 |
Q |
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| T |
441665 |
cgatcctttttcatttgtgactacaaacaagaaggtaaatgagtttaacggttagttatttgcatatgtatgacaacataaagaatctaaatataggtga |
441764 |
T |
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| Q |
567 |
aaacaaactgcaaccatattattagtaatgnnnnnnnnnnnctaatataacgatatttatttatttgaggtgaaaacaaactgcctcttcacctttgct |
665 |
Q |
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| T |
441765 |
aaacaaactgcaaccatattattagtaatg----aaaaaaactaatataaagatatttatctatttgaggtgaaaacaagctgcctcttcaccattgct |
441859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 441221 - 441341
Alignment:
| Q |
26 |
gcgagcccagtttttataacattgtccgtttgccatattcgattagaattaatcacatttacttcaaaatatgcaggaggcgtgacatgcttcataatta |
125 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
441221 |
gcgaccccagtttttataacattgtccgtttgccatattcgattagaattaatcacatttacttcaaaatatgcaggaggcgtgacatgcttcataatta |
441320 |
T |
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| Q |
126 |
tttgttcttttttgttggttc |
146 |
Q |
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| T |
441321 |
tttgttcttttttgttggttc |
441341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 521 - 594
Target Start/End: Complemental strand, 28605737 - 28605664
Alignment:
| Q |
521 |
gttatttgcatatgcatgacgacataaagaatctaaatataggtgaaaacaaactgcaaccatattattagtaa |
594 |
Q |
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| T |
28605737 |
gttatttgcatatgcatgacgatgtaaagaatccaaatatatgagaaaacaaactacaaccatatttttagtaa |
28605664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 396
Target Start/End: Complemental strand, 2485684 - 2485630
Alignment:
| Q |
342 |
tcatgcatgcattcttacgtgttactctttttacggtttgtgttttggtttggca |
396 |
Q |
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|||||||||||||||||||||| |||| || ||||||||| ||||||||||||| |
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| T |
2485684 |
tcatgcatgcattcttacgtgtctctctcttaacggtttgttttttggtttggca |
2485630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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