View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21025_low_2 (Length: 366)
Name: NF21025_low_2
Description: NF21025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21025_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 111 - 341
Target Start/End: Original strand, 10472697 - 10472927
Alignment:
| Q |
111 |
tgttatctgaaattaaactaaggaacacatgtgtaatttcgtcaaaaattatttagggggactagactaaaatttaagaaaggttatgcatgcctctctg |
210 |
Q |
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| T |
10472697 |
tgttatctgaaattaaactaaggaacacaggtgtaatttcgtcaaaaattatttagggggactagactaacatttaagaaaggttatgcatgcctctctg |
10472796 |
T |
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| Q |
211 |
gtttaacttttaatgtataaaaaataagtatagcaaatgattttttatactagtagcatatatagtttttaaatttgatccactcctcgttttaaattag |
310 |
Q |
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| T |
10472797 |
gtttaacttttaatgtataaaaaataagtatagcaaatgattttttatactagtagcatatatagtttttaaatttgatccactcctcgttttaaattag |
10472896 |
T |
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| Q |
311 |
atccacactttagttatcaacttgtcttata |
341 |
Q |
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| T |
10472897 |
atccacactttagttatcaacttgtcttata |
10472927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 10472601 - 10472640
Alignment:
| Q |
16 |
aagaaaataaaatcatgaatttaaaacttgaatatccata |
55 |
Q |
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| T |
10472601 |
aagaaaataaaatcatgaatttaaaatttgaatattcata |
10472640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 38655150 - 38655106
Alignment:
| Q |
14 |
agaagaaaataaaatcatgaatttaaaacttgaatatccatatgc |
58 |
Q |
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| T |
38655150 |
agaagaaaagaaaatcatgaatttgaaacttgaaaatcaatatgc |
38655106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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