View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21025_low_4 (Length: 239)
Name: NF21025_low_4
Description: NF21025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21025_low_4 |
 | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 48279857 - 48279636
Alignment:
| Q |
1 |
tgctccatgtgattccaatatcttgacctcatcaagaatggtgtgtctgctaccctggacataatagccaaataagaatagatnnnnnnntgtaacccga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
48279857 |
tgctccatgtgattccaatatcttgacctcatcaagaatggtgtgtctgctaccctggacataatagccaaataagaatagataaaaaaatataacccga |
48279758 |
T |
|
| Q |
101 |
acaaaaagacctacatcttattgagagaagagcaatatctaccttttctgaagagaagaaagaacatgaaagttttcttagtaaccgcatctgccgtacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48279757 |
acaaaaagacctacatcttattgagagaagagcagtatctaccttttctgaagagaagaaagaacatgaaagttttcttagtaaccgcatctgccgtacc |
48279658 |
T |
|
| Q |
201 |
gcgccatcaacatagcatgacc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
48279657 |
gcgccatcaacatagcatgacc |
48279636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40389701 - 40389480
Alignment:
| Q |
1 |
tgctccatgtgattccaatatcttgacctcatcaagaatggtgtgtctgctaccctggacataatagccaaataagaatagatnnnnnnntgtaacccga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
40389701 |
tgctccatgtgattccaatatcttgacctcatcaagaatggtgtgtctgctaccatggacataatagccatataagaatagataaaaaaatgtaacccgg |
40389602 |
T |
|
| Q |
101 |
acaaaaagacctacatcttattgagagaagagcaatatctaccttttctgaagagaagaaagaacatgaaagttttcttagtaaccgcatctgccgtacc |
200 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40389601 |
acaaaaagacttatatcttattgagagaagagcagtatctaccttttctgaagagaagaaagaacatgaaagttttcttagtaaccgcatctaccgtacc |
40389502 |
T |
|
| Q |
201 |
gcgccatcaacatagcatgacc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40389501 |
gcgccatcaacatagcatgacc |
40389480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29633770 - 29633550
Alignment:
| Q |
1 |
tgctccatgtgattccaatatcttgacctcatcaagaatggtgtgtctgctaccctggacataatagccaaataagaatagatnnnnnnntgtaacccga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
29633770 |
tgctccatgtgattccaatatcttgacctcatcaagaatgg-gtgtctgctaccatagacgtaatagccaaataagaatagataaaaaaatgtaacccga |
29633672 |
T |
|
| Q |
101 |
acaaaaagacctacatcttattgagagaagagcaatatctaccttttctgaagagaagaaagaacatgaaagttttcttagtaaccgcatctgccgtacc |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29633671 |
acaaaaagacttacatcttattgagagaagaacaatatctgccttttctgaagagaagaaagaacatgaaagttttcttagtaaccgcatatgccgtacc |
29633572 |
T |
|
| Q |
201 |
gcgccatcaacatagcatgacc |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
29633571 |
gcgccatcaacatagcaggacc |
29633550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 83461 - 83240
Alignment:
| Q |
1 |
tgctccatgtgattccaatatcttgacctcatcaagaatggtgtgtctgctaccctggacataatagccaaataagaatagatnnnnnnntgtaacccga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
83461 |
tgctccatgtgattccaatatcttgacctcatcatgaatggtgtgtctgctaccatggacataatagccaaataagaatagagaaaaaaatgtaacccga |
83362 |
T |
|
| Q |
101 |
acaaaaagacctacatcttattgagagaagagcaatatctaccttttctgaagagaagaaagaacatgaaagttttcttagtaaccgcatctgccgtacc |
200 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
83361 |
acaaaaatacttacatcttattgagagaagaacaatatctaccttttctgaagagaagaaagaacataaaagttttcttagtaaccgcatcttccgtacc |
83262 |
T |
|
| Q |
201 |
gcgccatcaacatagcatgacc |
222 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
83261 |
acgccatcaacatagcatgacc |
83240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 24564794 - 24564854
Alignment:
| Q |
121 |
ttgagagaagagcaatatctaccttttctgaa---gagaagaaagaacatgaaagttttct |
178 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
24564794 |
ttgagagaagagcactatatacctttcctgaaatggagaagaaagaacatgaaagttttct |
24564854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 24564691 - 24564731
Alignment:
| Q |
14 |
tccaatatcttgacctcatcaagaatggtgtgtctgctacc |
54 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||||||| |
|
|
| T |
24564691 |
tccaataccttgacctcttcaagaatggtgagtctgctacc |
24564731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University