View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21026_high_1 (Length: 875)

Name: NF21026_high_1
Description: NF21026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21026_high_1
NF21026_high_1
[»] chr6 (9 HSPs)
chr6 (18-221)||(30953933-30954140)
chr6 (74-179)||(30985562-30985670)
chr6 (74-179)||(30991726-30991834)
chr6 (680-758)||(30953426-30953504)
chr6 (288-445)||(30953711-30953869)
chr6 (474-515)||(30953640-30953681)
chr6 (820-859)||(30953325-30953364)
chr6 (474-515)||(28583736-28583777)
chr6 (474-515)||(30952702-30952743)
[»] chr5 (3 HSPs)
chr5 (291-341)||(25453334-25453384)
chr5 (293-335)||(26887135-26887177)
chr5 (291-343)||(42004986-42005039)
[»] chr3 (1 HSPs)
chr3 (291-341)||(2011964-2012014)
[»] chr4 (1 HSPs)
chr4 (291-340)||(20986049-20986098)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 2e-98; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 30954140 - 30953933
Alignment:
Q  18 gatttcatcgtggctagagacgaccgctttcacaccgagatatataaataagttattttacagaacacaaaaagaactttggctaaaggatataggtacc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30954140 gatttcatcgtggctagagacgaccgctttcacaccgagatatataaataagttattttacagaacacaaaaagaaatttggctaaaggatataggtacc 30954041  T
Q  118 ----aagtcacaacatgaagttgcatggtctaagttagtgttgcaattttgtttaagccttgtattaattgacttgaactactgattttgttaaaacaaa 213  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30954040 taccaagtcacaacatgaagttgcatggtctaagttagtgttgcaattttgtttaagccttgtattaattgagttgaactactgattttgttaaaacaaa 30953941  T
Q  214 atagagaa 221  Q
    ||||||||    
T  30953940 atagagaa 30953933  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 30985670 - 30985562
Alignment:
Q  74 tttacagaacacaaaaa--gaactttggctaaaggatataggtaccaagtcacaacatgaagttgcatggtct-aagttagtgttgcaattttgtttaag 170  Q
    |||||||||||||||||  |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30985670 tttacagaacacaaaaaatgaactttggcaaaaggatatgggtaccaagtcacaacatgaagttgcatggtctaaagttagtgttgcaattttgtttaag 30985571  T
Q  171 ccttgtatt 179  Q
    |||||||||    
T  30985570 ccttgtatt 30985562  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 30991834 - 30991726
Alignment:
Q  74 tttacagaacacaaaaa--gaactttggctaaaggatataggtaccaagtcacaacatgaagttgcatggtct-aagttagtgttgcaattttgtttaag 170  Q
    |||||||||||||||||  |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30991834 tttacagaacacaaaaaatgaactttggcaaaaggatatgggtaccaagtcacaacatgaagttgcatggtctaaagttagtgttgcaattttgtttaag 30991735  T
Q  171 ccttgtatt 179  Q
    |||||||||    
T  30991734 ccttgtatt 30991726  T

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Target: chr6; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 680 - 758
Target Start/End: Complemental strand, 30953504 - 30953426
Alignment:
Q  680 tattttgatggaaaaattgcagctcaaagaatcagagcccagcaacaacaccaatttttatgattttggatctaaaaac 758  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30953504 tattttgatggaaaaattgcagctcatagaatcagagcccagcaacaacaccaatttttatgattttggatctaaaaac 30953426  T

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Target: chr6; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 288 - 445
Target Start/End: Complemental strand, 30953869 - 30953711
Alignment:
Q  288 agagttaatagtgttttatcccctataatatatgaaacttttggttttaccccttgnnnnnnnnnnn-ttggattcgatgcttggaaaagtaagattctt 386  Q
    ||||||||||| |||||||||| | ||||||||||||||||||||||||| || ||            ||||||||| | ||||||||||||||||||||    
T  30953869 agagttaatagggttttatcccatgtaatatatgaaacttttggttttactccctgtaaaaaaaaaaattggattcggtccttggaaaagtaagattctt 30953770  T
Q  387 tagaaaacttccccaaaccacataactcatcggaacctcttatgcggcgttgacatgga 445  Q
     ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  30953769 cagaaaacctccccaagccacataactcatcggaacctcttatgcggggttgacatgga 30953711  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 474 - 515
Target Start/End: Complemental strand, 30953681 - 30953640
Alignment:
Q  474 gtcatccacgtgtgtaattcatttaccatgtcatatttaatt 515  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  30953681 gtcatccacatgtgtaattcatttaccatgtcatatttaatt 30953640  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 820 - 859
Target Start/End: Complemental strand, 30953364 - 30953325
Alignment:
Q  820 agatttgtcacatgctcttcccccttctccaatagatttt 859  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  30953364 agatttgtcacacgctcttcccccttctccaatagatttt 30953325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 515
Target Start/End: Original strand, 28583736 - 28583777
Alignment:
Q  474 gtcatccacgtgtgtaattcatttaccatgtcatatttaatt 515  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  28583736 gtcatccatgtgtgtaattcatttaccacgtcatatttaatt 28583777  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 515
Target Start/End: Original strand, 30952702 - 30952743
Alignment:
Q  474 gtcatccacgtgtgtaattcatttaccatgtcatatttaatt 515  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  30952702 gtcatccacgtgtgtaattcatttaccacttcatatttaatt 30952743  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 25453334 - 25453384
Alignment:
Q  291 gttaatagtgttttatcccctataatatatgaaacttttggttttacccct 341  Q
    |||||||||||||||| |||| ||||| |||  ||||||||||||||||||    
T  25453334 gttaatagtgttttattccctgtaatacatgtcacttttggttttacccct 25453384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 26887135 - 26887177
Alignment:
Q  293 taatagtgttttatcccctataatatatgaaacttttggtttt 335  Q
    |||||||||||||||||||||||||||||  ||||||| ||||    
T  26887135 taatagtgttttatcccctataatatatgtcacttttgatttt 26887177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 343
Target Start/End: Complemental strand, 42005039 - 42004986
Alignment:
Q  291 gttaatagtgttttatcccct-ataatatatgaaacttttggttttaccccttg 343  Q
    ||||||||||||||| ||| | ||||||||||| |||||||||||| |||||||    
T  42005039 gttaatagtgttttacccctttataatatatgacacttttggttttgccccttg 42004986  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 2012014 - 2011964
Alignment:
Q  291 gttaatagtgttttatcccctataatatatgaaacttttggttttacccct 341  Q
    |||||||| ||||||||||||||||||||||  | |||||||||| |||||    
T  2012014 gttaatagagttttatcccctataatatatggcatttttggttttccccct 2011964  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 20986098 - 20986049
Alignment:
Q  291 gttaatagtgttttatcccctataatatatgaaacttttggttttacccc 340  Q
    ||||||||||||||| |||||||||||||||| || ||| ||||| ||||    
T  20986098 gttaatagtgttttaccccctataatatatgacaccttttgttttgcccc 20986049  T

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