View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21026_high_2 (Length: 824)
Name: NF21026_high_2
Description: NF21026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21026_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 716; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 12 - 806
Target Start/End: Original strand, 28835066 - 28835859
Alignment:
| Q |
12 |
aagaatataatgattctatgagtattttccctattgattatttatacaacaaagaaaaatcaattttacaatatttattcaaaaatgctatcattgaaca |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28835066 |
aagaaaataatgattctatgagtattttccctattgattatttatacaacaaagaaaaatcaattttacaatatttattcaaaaatgctatcattgaaca |
28835165 |
T |
|
| Q |
112 |
gggtactctgaaaaatggaaatgttgtagcagtcaagaaactagttttgggaaaatcaaacaagatggtccatgattttgaaagtgaagtaaagcttata |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28835166 |
gggtactctgaaaaatggaaatgttgtagcagtcaagaaactagttttgggaaaatcaaacaagatggcccatgattttgaaagtgaagtaaagcttata |
28835265 |
T |
|
| Q |
212 |
agcaatgttcatcataggaatcttgttaaacttcttggttgtagcattaaaaaccaagagagaattcttgtttatgagtatatggcaaacagcagcctag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28835266 |
agcaatgttcatcataggaatcttgttaaacttcttggttgtagcattaaaaaccaagagagaattcttgtttatgagtatatggcaaacagcagcctag |
28835365 |
T |
|
| Q |
312 |
acaaattcttatttggtaaatctcttcaattcaaccactaagacaatcatttaatttgttgaatcttgcttcttcnnnnnnnnnctttccataatctcaa |
411 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28835366 |
acaaattcttatttggtaactctcttcaattcaaccactaatacaatcatttaatttgttgaatcttgcttcttcttttttttcttttccataatctcaa |
28835465 |
T |
|
| Q |
412 |
gtacatgattatccacagaattcatttaaagatcttgatattatgattcttcttgtacaatgaattttttataagagagtaagaaaatgtatatacttgg |
511 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28835466 |
gtacatgat-atccacagaattcatttaaagatcttgatattatgattcttcttgtacaatgaattttttataagagagtaagaaaatatatatacttgg |
28835564 |
T |
|
| Q |
512 |
atctatgatacagactttctcttcactctaattttctttattgtattttgtgacagtgaagatgtcttgtgtgcagtgaacatatgaccacacttttcta |
611 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28835565 |
atctatgatacagattttctcttcactctaattttctttgttgtattttttgacagtgaagatgtcttgtgtgcagtgaacatatgaccacacttttcta |
28835664 |
T |
|
| Q |
612 |
ttatgtatatgttctttctcttaggtagttatttcattagtaaccatccattcattttttgactgtaaaataaacttcattcattcaaatggtaaaatct |
711 |
Q |
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| T |
28835665 |
ttatgtatatgttctttctctttggtagttatttcattagtaaccatccattcattttttgactgtaaaataaacttcattcattcaaatggtaaaatct |
28835764 |
T |
|
| Q |
712 |
gaataatacaatctgtaactacccattcataaaagggagaggagaggtatttcaatttattttgaatttcaaaataaaacctcgttgactttaat |
806 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28835765 |
gaataatacaatctgtaactacccattcataaaagggagaggagaggtatttcaatttattttgaatttcaaaataaaacctcggtgactttaat |
28835859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 104 - 375
Target Start/End: Original strand, 28826220 - 28826494
Alignment:
| Q |
104 |
attgaacagggtactctgaaaaatggaaatgttgtagcagtcaagaaactagttttgggaaaatcaaacaagatggtccatgattttgaaagtgaagtaa |
203 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | | ||||||||||||||||||||| |
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| T |
28826220 |
attgaatagggtactctgaaaaatggaaatgttgtagcagttaagaaactagttttgggaaaatcaagcaagatagacaatgattttgaaagtgaagtaa |
28826319 |
T |
|
| Q |
204 |
agcttataagcaatgttcatcataggaatcttgttaaacttcttggttgtagcattaaaaaccaagagagaattcttgtttatgagtatatggcaaacag |
303 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||| |||||||||||| ||||||||||| || ||||||||||| |
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| T |
28826320 |
agcttataagcaatgttcatcataggaatcttgttagacttcttggctgttgcagtaaaagccaagagagaatccttgtttatgaatacatggcaaacag |
28826419 |
T |
|
| Q |
304 |
cagcctagacaaattcttatttgg---taaatctcttcaattcaaccactaagacaatcatttaatttgttgaat |
375 |
Q |
| |
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|||||||||||||||||| ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
28826420 |
cagcctagacaaattcttgtttggtaataattctcttcaattcaaccactaatacaatcatttaatttgttgaat |
28826494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 188 - 331
Target Start/End: Original strand, 28819738 - 28819881
Alignment:
| Q |
188 |
tttgaaagtgaagtaaagcttataagcaatgttcatcataggaatcttgttaaacttcttggttgtagcattaaaaaccaagagagaattcttgtttatg |
287 |
Q |
| |
|
||||||||||| || ||||| ||||| |||||||||||||||||||| ||| ||||| || ||| ||| |||| |||||||||||| |||||||||| |
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| T |
28819738 |
tttgaaagtgaggtgaagctcataagtaatgttcatcataggaatctagttcggcttctcggatgttgcagtaaaggccaagagagaatccttgtttatg |
28819837 |
T |
|
| Q |
288 |
agtatatggcaaacagcagcctagacaaattcttatttggtaaa |
331 |
Q |
| |
|
| || |||||||||||||| || |||| |||||||||||||||| |
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| T |
28819838 |
aatacatggcaaacagcagtcttgacagattcttatttggtaaa |
28819881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 726 - 791
Target Start/End: Original strand, 38272416 - 38272481
Alignment:
| Q |
726 |
gtaactacccattcataaaagggagaggagaggtatttcaatttattttgaatttcaaaataaaac |
791 |
Q |
| |
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||||||||| ||| |||||||||||||||||| ||||| |||||| |||||||||||||||||||| |
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| T |
38272416 |
gtaactacctattaataaaagggagaggagagatattttaatttagtttgaatttcaaaataaaac |
38272481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 766 - 799
Target Start/End: Complemental strand, 32627965 - 32627932
Alignment:
| Q |
766 |
atttattttgaatttcaaaataaaacctcgttga |
799 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
32627965 |
atttattttgaatttcaaaataaaacctcattga |
32627932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 709
Target Start/End: Original strand, 16544993 - 16545026
Alignment:
| Q |
676 |
gtaaaataaacttcattcattcaaatggtaaaat |
709 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |
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|
| T |
16544993 |
gtaaaataaacttcattcattcaaatgttaaaat |
16545026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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