View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21026_low_10 (Length: 239)
Name: NF21026_low_10
Description: NF21026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21026_low_10 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 32688396 - 32688180
Alignment:
| Q |
18 |
tcttgaatgttcataaattgatgtatgtgttggatgactattaaccataacttttacaacatgatctaggataattgttcaatttgtaataactttggac |
117 |
Q |
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| T |
32688396 |
tcttgaatgttcataaattgatgtatgtgttggatgactattaaccatagcttttacaacatgatctaagataattgttcaatttgtaataa-tttagac |
32688298 |
T |
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| Q |
118 |
atattatatatactaccgtctttgtgacaagagttttaatgcgcaaccaaacctttaatggacacaaactcacgtaagacattaggaggttgtggtnnnn |
217 |
Q |
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| T |
32688297 |
atattatat----taccatctttgtgacaagaattttaatgtgcaaccaaacttttaatggacacaaactcaagtaagacattaggaggttgtggtaaaa |
32688202 |
T |
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| Q |
218 |
nnngagggttatgagcaaatac |
239 |
Q |
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| T |
32688201 |
gaagagggttatgagcaaatac |
32688180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 15691835 - 15691769
Alignment:
| Q |
42 |
atgtgttggatgactattaaccataacttttacaacatgatctaggataattgttcaatttgtaata |
108 |
Q |
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| T |
15691835 |
atgtgttggatgactattaatcctaacttttgatacatggtataggataattgttcaatatgtaata |
15691769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 32008290 - 32008336
Alignment:
| Q |
22 |
gaatgttcataaattgatgtatgtgttggatgactattaaccataac |
68 |
Q |
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| T |
32008290 |
gaatgttcataaatggatttatgtgttggatcactattaagcataac |
32008336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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