View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21026_low_11 (Length: 238)
Name: NF21026_low_11
Description: NF21026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21026_low_11 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 32687867 - 32687633
Alignment:
| Q |
1 |
ttttcatcaaatgttattgaaacaaatattatatcattttcatttctaccccttattttgtcaaagagtggacctgagtcattattgttgtacgttagct |
100 |
Q |
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| T |
32687867 |
ttttcatcaaatgttattgaaacaaatattatatcattttcatttctaccccttattttgtcaaagagtggacctgagtcattattgttgtacgttagct |
32687768 |
T |
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| Q |
101 |
ttcatgagcgttgttnnnnnnngttagcgtttatgggatacaagagaatttttatagagttattagtaaaaaagttagtatttatttccagaattaacgt |
200 |
Q |
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| T |
32687767 |
ttcatgagcgttgttaaaaaaagttagcgtttatgggatacaaaagaatttttatagagttattagtaaaaaagttagtatttatttccagatttaacgt |
32687668 |
T |
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| Q |
201 |
gttaatgggataaaagagaattatttttatatgat |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32687667 |
gttaatgggataaaagagaattatttttatatgat |
32687633 |
T |
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Target: scaffold0028 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37680 - 37638
Alignment:
| Q |
1 |
ttttcatcaaatgttattgaaacaaatattatatcattttcat |
43 |
Q |
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|||||| ||||||||||||||||||| |||||||| ||||||| |
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| T |
37680 |
ttttcagcaaatgttattgaaacaaaaattatatcgttttcat |
37638 |
T |
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