View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21026_low_12 (Length: 206)
Name: NF21026_low_12
Description: NF21026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21026_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 54257658 - 54257734
Alignment:
| Q |
13 |
gaagaatatggaagttttattttattgtaaaacttaaaccaacaaaactcgagggactaatctatgtaaattggatc |
89 |
Q |
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| T |
54257658 |
gaagaaaatgaaagttttattttattgtaaaacttaaaccaacaaaactcgagggactaatctatctaaattggatc |
54257734 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 54257805 - 54257841
Alignment:
| Q |
154 |
aaaaacaacttgtagaaggagagagaaggaaatgatc |
190 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
54257805 |
aaaaacaacttgtagaaggagagagaaggaaaggatc |
54257841 |
T |
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