View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21026_low_4 (Length: 647)
Name: NF21026_low_4
Description: NF21026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21026_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 126 - 630
Target Start/End: Original strand, 4097261 - 4097765
Alignment:
| Q |
126 |
ttgaagggaacttaattatatcactttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtg |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4097261 |
ttgaagggaacttaattatatcactttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtg |
4097360 |
T |
|
| Q |
226 |
atgcaacaaactacgaatttaacgaagagacggggaagcttcaagtcttcattcctcaggtctgcgaagtaggctataaggattcatccgtcttgcgttt |
325 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4097361 |
atgcaacaaactacgaatttaacgaagagacgggaaagcttgaagtcttcatccctcaggtctgcgaagtaggctataaggattcatccgtcttgcgttt |
4097460 |
T |
|
| Q |
326 |
cttcaccaccgttactggttatctggagaaaggaaagctagcagacatcgagggaatgaagacaaaagtaattatctgggtaaaagtcacaaccattttc |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4097461 |
cttcaccaccgttactggttatctggagaaaggaaagctagcagacatcgagggaatgaagacaaaagtaattatctgggtaaaagtgacaaccattttc |
4097560 |
T |
|
| Q |
426 |
tccgagggatcaaagctctatgtcactgctggcatgaagaaaacaaggagtagggaagcatatgatgtttcaagagatggtgtacctgtagataagttct |
525 |
Q |
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| T |
4097561 |
tccgagggatcaaagctctatgtgactgctggcatgaagaaaacaaggagtagggaagcatatgatgttacaagagatggtgtacctgtagataagttct |
4097660 |
T |
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| Q |
526 |
aaaactttcatatcataatctgtaaaagcctttcttgttttatacaccattttaagtctttttgtatggttgggttgtgatttgagaaatgtggaaagtc |
625 |
Q |
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| T |
4097661 |
aaaactttcatatgataatctgtaaaagcctttgttgttttatacaccattttaagtctttttgtatggttgggttgtgatttgagaaatgtggaaagtc |
4097760 |
T |
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| Q |
626 |
tcttt |
630 |
Q |
| |
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||||| |
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| T |
4097761 |
tcttt |
4097765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 4096085 - 4096183
Alignment:
| Q |
5 |
tgtccaagaatattgaaggcggaaccaaatggttggtcaacaaagtaaaaggtttgtatttcctatttccatatgttgctcaaacatttatcttttcaa |
103 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4096085 |
tgtccaacagtattgaaggcggaaccaaatggttggtcaacaaagtaaaaggtttctatttcctatttccatatgttgctcaaacatctatcttttcaa |
4096183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 150 - 527
Target Start/End: Complemental strand, 25796905 - 25796528
Alignment:
| Q |
150 |
tttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtgatgcaacaaactacgaatttaacg |
249 |
Q |
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| T |
25796905 |
tttgcaggaaagatgcaaaaaccattaacagagttgctgaaggagtatgatctaccaataggaatctttccccgtgacgcaacaaactacgagttcaatg |
25796806 |
T |
|
| Q |
250 |
aagagacggggaagcttcaagtcttcattcctcaggtctgcgaagtaggctataaggattcatccgtcttgcgtttcttcaccaccgttactggttatct |
349 |
Q |
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| T |
25796805 |
aagaaacaagaaagcttgttgtttacattcctcaagtgtgtgaagtaggctatagagattcatcagtcttgcgcttcacaaccactgtttctggttactt |
25796706 |
T |
|
| Q |
350 |
ggagaaaggaaagctagcagacatcgagggaatgaagacaaaagtaattatctgggtaaaagtcacaaccattttctccgagggatcaaagctctatgtc |
449 |
Q |
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|||||||||||||||||| || || ||||| |||||||| ||||| | | ||||| ||||| || |||||| ||||||||| ||||||| | || |
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| T |
25796705 |
ggagaaaggaaagctagctgatatagagggtatgaagaccaaagtgttggtgtgggtgaaagttaccgccatttcatccgagggaccaaagctgaacttc |
25796606 |
T |
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| Q |
450 |
actgctggcatgaagaaaacaaggagtagggaagcatatgatgtttcaagagatggtgtacctgtagataagttctaa |
527 |
Q |
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||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||| | ||||||| |||||| |
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| T |
25796605 |
actgctggcatgaagaaaacaaggaaaagggaagcttatgaagtttctagagatggtgtaattatagataaattctaa |
25796528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 25797218 - 25797168
Alignment:
| Q |
16 |
attgaaggcggaaccaaatggttggtcaacaaagtaaaaggtttgtatttc |
66 |
Q |
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|||||||| |||||||||||| | ||||||||| ||||||||||||||||| |
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| T |
25797218 |
attgaaggaggaaccaaatggctcgtcaacaaattaaaaggtttgtatttc |
25797168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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