View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21026_low_5 (Length: 390)
Name: NF21026_low_5
Description: NF21026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21026_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 6301459 - 6301122
Alignment:
| Q |
18 |
ggaagcgtagttcatgtcgaaaattgacgcagcgagaagcttgcttagagtgaaaggaacgttggtgagtgaagttttgatcatgtagcaatgaaattga |
117 |
Q |
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| T |
6301459 |
ggaagcgtagttcatgtcgaaaattgacgcagcgagaagcttgcttagagtgaaaggaacgttggtgagtgaagttttgatcatgtagcaatgaaattga |
6301360 |
T |
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| Q |
118 |
tgaatttcggtgatggttttgcatgattttaatgcaagtgttagtttgtgaaatgcgtttgatatagcttgaaactgtgtattagccataattcgagtta |
217 |
Q |
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| T |
6301359 |
tgaatttcggtgatggttttgcatgattttaatgcaagtgttagtttgtgaaatgcgtttgatatagcttgaaactgtgtattagccataattcgagtta |
6301260 |
T |
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| Q |
218 |
gggatgaccaaaaagaatatt-atttggattaatcatatataatttttgacaaacaattaaattatagttggaatt----ttannnnnnnncttgttgag |
312 |
Q |
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| T |
6301259 |
gggatgaccaaaaagaatattaatttggattaatcatatataatttttgacaaacaattaaa-tatagttggaatttttatttttattttttttgttgag |
6301161 |
T |
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| Q |
313 |
gaattatagttggaagatagttaagttctttattgtaca |
351 |
Q |
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| T |
6301160 |
gaattatagttggaagttagttaagttcttcattgtaca |
6301122 |
T |
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