View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21026_low_8 (Length: 261)

Name: NF21026_low_8
Description: NF21026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21026_low_8
NF21026_low_8
[»] chr8 (12 HSPs)
chr8 (17-246)||(1096592-1096821)
chr8 (17-114)||(1074139-1074236)
chr8 (202-246)||(1073994-1074038)
chr8 (18-66)||(38602430-38602478)
chr8 (17-66)||(30657696-30657745)
chr8 (17-64)||(43717855-43717902)
chr8 (37-74)||(5290701-5290738)
chr8 (17-66)||(15180641-15180690)
chr8 (17-66)||(30251373-30251422)
chr8 (17-66)||(32213221-32213270)
chr8 (19-66)||(922325-922373)
chr8 (26-66)||(41475031-41475071)
[»] chr5 (23 HSPs)
chr5 (17-70)||(9107192-9107245)
chr5 (17-70)||(34736442-34736495)
chr5 (84-164)||(11064393-11064471)
chr5 (19-66)||(10640057-10640104)
chr5 (19-54)||(34907720-34907755)
chr5 (24-66)||(32010054-32010096)
chr5 (28-66)||(34198534-34198572)
chr5 (28-78)||(36796614-36796664)
chr5 (18-68)||(42582605-42582655)
chr5 (27-60)||(1084064-1084097)
chr5 (25-70)||(11353050-11353095)
chr5 (25-70)||(11374299-11374344)
chr5 (37-66)||(12074365-12074394)
chr5 (17-54)||(35445775-35445812)
chr5 (21-66)||(39594913-39594958)
chr5 (17-66)||(41419421-41419470)
chr5 (17-66)||(41534540-41534589)
chr5 (17-66)||(42568949-42568998)
chr5 (17-70)||(43300980-43301033)
chr5 (26-66)||(32197844-32197884)
chr5 (22-66)||(35299872-35299916)
chr5 (17-65)||(39105567-39105615)
chr5 (40-72)||(40335786-40335818)
[»] chr3 (16 HSPs)
chr3 (17-66)||(25447164-25447213)
chr3 (19-66)||(16072960-16073007)
chr3 (17-63)||(33405114-33405160)
chr3 (21-66)||(9832674-9832719)
chr3 (17-66)||(20170633-20170682)
chr3 (23-64)||(26911699-26911740)
chr3 (85-176)||(44061055-44061142)
chr3 (86-176)||(30956659-30956745)
chr3 (86-176)||(30972471-30972557)
chr3 (28-66)||(20874230-20874268)
chr3 (19-65)||(51929277-51929323)
chr3 (26-75)||(29114536-29114585)
chr3 (23-72)||(32582845-32582894)
chr3 (85-125)||(22203428-22203468)
chr3 (26-66)||(28838070-28838110)
chr3 (28-68)||(40294795-40294835)
[»] chr7 (10 HSPs)
chr7 (17-66)||(44822060-44822109)
chr7 (17-71)||(4970706-4970760)
chr7 (17-66)||(19302482-19302531)
chr7 (26-66)||(7644226-7644266)
chr7 (19-67)||(33266404-33266452)
chr7 (17-72)||(22296141-22296196)
chr7 (17-71)||(45593630-45593685)
chr7 (40-70)||(44917441-44917471)
chr7 (37-66)||(47134677-47134706)
chr7 (27-79)||(15321690-15321742)
[»] chr6 (13 HSPs)
chr6 (17-66)||(21405073-21405122)
chr6 (17-66)||(6538616-6538665)
chr6 (19-70)||(6536716-6536767)
chr6 (20-66)||(34404645-34404691)
chr6 (28-69)||(1231215-1231256)
chr6 (17-66)||(9911802-9911851)
chr6 (37-70)||(29249515-29249548)
chr6 (26-66)||(281767-281807)
chr6 (26-66)||(3525235-3525275)
chr6 (23-71)||(4163261-4163309)
chr6 (23-71)||(4224882-4224930)
chr6 (26-66)||(30536884-30536924)
chr6 (21-57)||(33943375-33943411)
[»] chr4 (19 HSPs)
chr4 (17-66)||(41336862-41336911)
chr4 (19-66)||(27043749-27043796)
chr4 (17-64)||(52315118-52315165)
chr4 (17-74)||(17822776-17822833)
chr4 (37-70)||(44638141-44638174)
chr4 (27-76)||(54575512-54575561)
chr4 (17-65)||(15173223-15173271)
chr4 (40-79)||(37575842-37575881)
chr4 (19-66)||(55437180-55437227)
chr4 (20-66)||(42403942-42403988)
chr4 (17-66)||(8705043-8705092)
chr4 (37-66)||(11155141-11155170)
chr4 (17-66)||(24169365-24169414)
chr4 (25-66)||(25571369-25571410)
chr4 (17-66)||(29774342-29774391)
chr4 (28-69)||(32765009-32765050)
chr4 (17-66)||(54426145-54426194)
chr4 (85-164)||(55414452-55414527)
chr4 (28-68)||(55870259-55870299)
[»] chr2 (20 HSPs)
chr2 (27-76)||(1830151-1830200)
chr2 (19-70)||(2416417-2416468)
chr2 (17-66)||(10619139-10619188)
chr2 (19-76)||(15305778-15305835)
chr2 (17-66)||(18179051-18179100)
chr2 (17-66)||(30331853-30331902)
chr2 (18-70)||(44600626-44600678)
chr2 (17-64)||(42419895-42419942)
chr2 (17-64)||(44590126-44590173)
chr2 (40-70)||(37419582-37419612)
chr2 (17-66)||(3312179-3312228)
chr2 (17-66)||(7928217-7928266)
chr2 (21-70)||(20952461-20952510)
chr2 (17-66)||(27317481-27317530)
chr2 (28-65)||(40059381-40059418)
chr2 (28-65)||(40085281-40085318)
chr2 (89-176)||(41407252-41407336)
chr2 (17-66)||(42659130-42659179)
chr2 (30-66)||(7103392-7103428)
chr2 (38-66)||(43910932-43910960)
[»] chr1 (14 HSPs)
chr1 (17-68)||(37617382-37617433)
chr1 (17-66)||(3233934-3233983)
chr1 (17-65)||(24334297-24334345)
chr1 (37-68)||(28467555-28467586)
chr1 (17-60)||(49938849-49938892)
chr1 (17-76)||(50644164-50644223)
chr1 (17-63)||(7244576-7244622)
chr1 (19-65)||(39976130-39976176)
chr1 (17-66)||(27146174-27146223)
chr1 (17-66)||(33204313-33204362)
chr1 (85-164)||(49888730-49888805)
chr1 (40-72)||(5886905-5886937)
chr1 (147-187)||(9656590-9656630)
chr1 (30-66)||(33976293-33976329)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 1096592 - 1096821
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgccttaagtagataaactcataagttctcaaagataacttatgacaaca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1096592 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgccttaagtagataaactcataagttctcaaagataacttatgacaaca 1096691  T
Q  117 acttatagaagcttatacaaaaacaaaataaacttaattttatcttttgctacagaaataaatagcttatagaaaagtgagttatgttaccagtcatttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1096692 acttatagaagcttatacaaaaacaaaataaacttaattttatcttttgctacagaaataaatagcttatagaaaagtgagttatgttaccagtcatttt 1096791  T
Q  217 ggaaggaagatatgaaagggttgttggaag 246  Q
    |||||||||| |||||||||||||||||||    
T  1096792 ggaaggaagagatgaaagggttgttggaag 1096821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 1074236 - 1074139
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgccttaagtagataaactcataagttctcaaagataacttatgacaa 114  Q
    ||||||||||||||| | | |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||||    
T  1074236 tctcacaaaacttatatgagtaaataaactcaaataagtcaatccaaacaagccctaagtagataaattcataagttctcaaagatgacttatgacaa 1074139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 1074038 - 1073994
Alignment:
Q  202 gttaccagtcattttggaaggaagatatgaaagggttgttggaag 246  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||    
T  1074038 gttaccagtcattttggaaggaagagatgaaagggttattggaag 1073994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 38602430 - 38602478
Alignment:
Q  18 ctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||||||||||| || |||| ||||||||||||||||||||||    
T  38602430 ctcacaaaacttatgtcagtagataagctcaaataagtcaatccaaaca 38602478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 30657745 - 30657696
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||| |||||||| || ||||||||||||||||| |||||||||    
T  30657745 tctcacaaaatttatgtcattagataaactcaaataagtcgatccaaaca 30657696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 43717902 - 43717855
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaa 64  Q
    ||||||||||||||||||| || |||| |||||||||| |||||||||    
T  43717902 tctcacaaaacttatgtcaatagataagctcaaataagccaatccaaa 43717855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 5290701 - 5290738
Alignment:
Q  37 taaataaactcaaataagtcaatccaaacatgccttaa 74  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  5290701 taaataaactcaaatgagtcaattcaaacatgccttaa 5290738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 15180641 - 15180690
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||| |||||||||| || || ||||||||||||||| |||||||||||    
T  15180641 tctcataaaacttatggcagtagataaactcaaataagccaatccaaaca 15180690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 30251422 - 30251373
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||| |||||||||||| || |||| |||||||||| |||||||||||    
T  30251422 tctcacgaaacttatgtcagtagataagctcaaataagccaatccaaaca 30251373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 32213221 - 32213270
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||| ||| || |||| |||||||||| |||||||||||    
T  32213221 tctcacaaaacttatatcagtatataagctcaaataagacaatccaaaca 32213270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 922373 - 922325
Alignment:
Q  19 tcacaaaacttatgtcactaaataaactcaaataagtc-aatccaaaca 66  Q
    |||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  922373 tcacaaaacttaggtcagtatataaactcaaataagtctaatccaaaca 922325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 41475071 - 41475031
Alignment:
Q  26 acttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||| | ||||| ||||||||||||||||||||||    
T  41475071 acttatgtcaatcaataagctcaaataagtcaatccaaaca 41475031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 9107192 - 9107245
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgcc 70  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  9107192 tctcacaaaacttatgtcactagataaactcaaataagtcaatccaaacctgcc 9107245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 34736495 - 34736442
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgcc 70  Q
    |||||||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  34736495 tctcacaaaacttatgtcaccagataagctcaaataagtcaatccaaacatgcc 34736442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 11064471 - 11064393
Alignment:
Q  84 ctcataagttctcaaagataacttatgacaacaacttatagaagcttatacaaaaacaaaataaacttaattttatctttt 164  Q
    |||||||||  ||||||||| ||||||| | |||||||||  | |||||||||||||||  |||||||||||||| |||||    
T  11064471 ctcataagtcatcaaagatagcttatgaaagcaacttata--accttatacaaaaacaatttaaacttaattttacctttt 11064393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 10640057 - 10640104
Alignment:
Q  19 tcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||||    
T  10640057 tcacaaaacttatgtcagtagataaactcaaataagctaatccaaaca 10640104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 34907755 - 34907720
Alignment:
Q  19 tcacaaaacttatgtcactaaataaactcaaataag 54  Q
    ||||||||||||||||| ||||||||||||||||||    
T  34907755 tcacaaaacttatgtcaataaataaactcaaataag 34907720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 32010054 - 32010096
Alignment:
Q  24 aaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||| | || |||||||||||||||||||||||||||    
T  32010054 aaacttatgtgagtagataaactcaaataagtcaatccaaaca 32010096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 34198534 - 34198572
Alignment:
Q  28 ttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  34198534 ttatgttagtaaataaactcaaataagtcaatccaaaca 34198572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 36796664 - 36796614
Alignment:
Q  28 ttatgtcactaaataaactcaaataagtcaatccaaacatgccttaagtag 78  Q
    |||||||| || |||| |||||||||||||||||||||| |||| ||||||    
T  36796664 ttatgtcattagataagctcaaataagtcaatccaaacaagcctcaagtag 36796614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 42582655 - 42582605
Alignment:
Q  18 ctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatg 68  Q
    |||||||||||||| ||| || |||  ||||||||||||||||||||||||    
T  42582655 ctcacaaaacttatatcattagataccctcaaataagtcaatccaaacatg 42582605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 1084097 - 1084064
Alignment:
Q  27 cttatgtcactaaataaactcaaataagtcaatc 60  Q
    ||||||||| ||||||||||||||||||||||||    
T  1084097 cttatgtcagtaaataaactcaaataagtcaatc 1084064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 11353050 - 11353095
Alignment:
Q  25 aacttatgtcactaaataaactcaaataagtcaatccaaacatgcc 70  Q
    |||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  11353050 aacttatgccactatataagctcaaataagtgaatccaaacatgcc 11353095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 11374344 - 11374299
Alignment:
Q  25 aacttatgtcactaaataaactcaaataagtcaatccaaacatgcc 70  Q
    |||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  11374344 aacttatgccactatataagctcaaataagtgaatccaaacatgcc 11374299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 12074394 - 12074365
Alignment:
Q  37 taaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||||||||||||||||||    
T  12074394 taaataaactcaaataagtcaatccaaaca 12074365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 35445812 - 35445775
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataag 54  Q
    ||||||||||||||||||| || |||||||||||||||    
T  35445812 tctcacaaaacttatgtcagtagataaactcaaataag 35445775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 39594913 - 39594958
Alignment:
Q  21 acaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||  || |||| ||||||||||||||||||||||    
T  39594913 acaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 39594958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 41419421 - 41419470
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||| |||||||| || || | ||||||||||||||||||||||    
T  41419421 tctcacaaaatttatgtcagtagattagctcaaataagtcaatccaaaca 41419470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 41534540 - 41534589
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||| |||||||| || || | ||||||||||||||||||||||    
T  41534540 tctcacaaaatttatgtcagtagattagctcaaataagtcaatccaaaca 41534589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 42568998 - 42568949
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||| |||||||||| | |  |||||||||||||||||||||||||||    
T  42568998 tctcacgaaacttatgttagtgcataaactcaaataagtcaatccaaaca 42568949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 43300980 - 43301033
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgcc 70  Q
    ||||| |||||||||| || || |||| |||||||||| |||||||||||||||    
T  43300980 tctcataaaacttatgccattatataagctcaaataagccaatccaaacatgcc 43301033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 32197844 - 32197884
Alignment:
Q  26 acttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||| || ||||||||||| |||||||||||||||    
T  32197844 acttatgtcagtagataaactcaaaaaagtcaatccaaaca 32197884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 35299872 - 35299916
Alignment:
Q  22 caaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||| |||||| || |||| ||||||||||||||||||||||    
T  35299872 caaaactcatgtcaatagataagctcaaataagtcaatccaaaca 35299916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 39105567 - 39105615
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaac 65  Q
    ||||| |||||||||  | ||| ||||||||||||||||||||||||||    
T  39105567 tctcataaaacttatacccctagataaactcaaataagtcaatccaaac 39105615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 40335818 - 40335786
Alignment:
Q  40 ataaactcaaataagtcaatccaaacatgcctt 72  Q
    ||||||||||||||||||||||||||| |||||    
T  40335818 ataaactcaaataagtcaatccaaacaggcctt 40335786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 25447213 - 25447164
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||    
T  25447213 tctcacaaaacttatgtcagtagataaactcaaataagtcaatccaaaca 25447164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 16073007 - 16072960
Alignment:
Q  19 tcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||||| || |||| ||||||||||||||||||||||    
T  16073007 tcacaaaacttatgtcattagataagctcaaataagtcaatccaaaca 16072960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 33405160 - 33405114
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaa 63  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||    
T  33405160 tctcccaaaacttatgtcagtagataaactcaaataagtcaatccaa 33405114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 9832719 - 9832674
Alignment:
Q  21 acaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||||    
T  9832719 acaaaacttatgtcaataaataagctcaaataagtcaatctaaaca 9832674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 20170682 - 20170633
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||| ||||||||||||||| |||| |||||||||| |||||||||||    
T  20170682 tctcactaaacttatgtcactagataagctcaaataagccaatccaaaca 20170633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 26911699 - 26911740
Alignment:
Q  23 aaaacttatgtcactaaataaactcaaataagtcaatccaaa 64  Q
    ||||||||||||| || |||||||||||||||||||||||||    
T  26911699 aaaacttatgtcagtagataaactcaaataagtcaatccaaa 26911740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 44061055 - 44061142
Alignment:
Q  85 tcataagttctcaaagataacttatgacaacaacttatagaagcttatacaaaaacaaaataaacttaattttatcttttgctacagaaata 176  Q
    |||||||||||| |||||| | ||||| ||||||||||   |||||||| ||||||||  ||| ||| |||||||||||||||| |||||||    
T  44061055 tcataagttctctaagatatcatatgaaaacaacttat---agcttatagaaaaacaatttaacctt-attttatcttttgctatagaaata 44061142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 30956659 - 30956745
Alignment:
Q  86 cataagttctcaaagataacttatgacaacaacttatagaagcttatacaaaaacaaaataaacttaattttatcttttgctacagaaata 176  Q
    ||||||||||| |||||| ||| ||| ||||||||||   ||| ||||||||||| || | ||||| |||||||||||||||| |||||||    
T  30956659 cataagttctccaagatagcttttgaaaacaacttat---agcctatacaaaaac-aatttaactttattttatcttttgctatagaaata 30956745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 30972471 - 30972557
Alignment:
Q  86 cataagttctcaaagataacttatgacaacaacttatagaagcttatacaaaaacaaaataaacttaattttatcttttgctacagaaata 176  Q
    ||||||||||| |||||| ||| ||| ||||||||||   ||| ||||||||||| || | ||||| |||||||||||||||| |||||||    
T  30972471 cataagttctccaagatagcttttgaaaacaacttat---agcctatacaaaaac-aatttaactttattttatcttttgctatagaaata 30972557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 20874268 - 20874230
Alignment:
Q  28 ttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||| || |||||||||||||||||||||||||||    
T  20874268 ttatgtcattatataaactcaaataagtcaatccaaaca 20874230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 51929323 - 51929277
Alignment:
Q  19 tcacaaaacttatgtcactaaataaactcaaataagtcaatccaaac 65  Q
    |||||||||||||| || |||||||  ||||||||||||||||||||    
T  51929323 tcacaaaacttatgccagtaaataaggtcaaataagtcaatccaaac 51929277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 29114536 - 29114585
Alignment:
Q  26 acttatgtcactaaataaactcaaataagtcaatccaaacatgccttaag 75  Q
    |||||||||| || ||||| ||||||||||||||| ||||| ||||||||    
T  29114536 acttatgtcagtagataaagtcaaataagtcaatcgaaacaggccttaag 29114585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 32582845 - 32582894
Alignment:
Q  23 aaaacttatgtcactaaataaactcaaataagtcaatccaaacatgcctt 72  Q
    ||||||||||  | || |||||||||||||||||||||||||||| ||||    
T  32582845 aaaacttatggtagtagataaactcaaataagtcaatccaaacatacctt 32582894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 22203468 - 22203428
Alignment:
Q  85 tcataagttctcaaagataacttatgacaacaacttataga 125  Q
    |||||||||||| |||||| ||||||| |||||||||||||    
T  22203468 tcataagttctccaagatagcttatgaaaacaacttataga 22203428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 28838110 - 28838070
Alignment:
Q  26 acttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||| ||||| || |||||||||||||||||||||||||||    
T  28838110 acttttgtcaatatataaactcaaataagtcaatccaaaca 28838070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 40294795 - 40294835
Alignment:
Q  28 ttatgtcactaaataaactcaaataagtcaatccaaacatg 68  Q
    |||||||| ||||||||||||||||| |||||| |||||||    
T  40294795 ttatgtcaataaataaactcaaataaatcaatctaaacatg 40294835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 44822060 - 44822109
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||||    
T  44822060 tctcacaaaacttatgtcagcagataaactcaaataagtcaatccaaaca 44822109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 4970760 - 4970706
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgcct 71  Q
    |||||||| ||||||||||| | |||| |||||||||||||||||||||| ||||    
T  4970760 tctcacaagacttatgtcacgagataagctcaaataagtcaatccaaacaggcct 4970706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 19302531 - 19302482
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||||||| || |||| ||||||||||||||| ||||||    
T  19302531 tctcacaaaacttatgtcagtagataagctcaaataagtcaattcaaaca 19302482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 7644266 - 7644226
Alignment:
Q  26 acttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  7644266 acttatggcactaaataagctcaaataagtcaatccaaaca 7644226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 33266452 - 33266404
Alignment:
Q  19 tcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacat 67  Q
    ||||||||||||||||  || |||| |||||||||||||||||||||||    
T  33266452 tcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacat 33266404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 22296196 - 22296141
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgcctt 72  Q
    ||||||| ||||||||||||   |||||||||||||||||||| |||||| |||||    
T  22296196 tctcacagaacttatgtcaccggataaactcaaataagtcaattcaaacaagcctt 22296141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 45593630 - 45593685
Alignment:
Q  17 tctcacaaaacttatgtcactaa-ataaactcaaataagtcaatccaaacatgcct 71  Q
    ||||||||| ||||||||| ||| ||||||||||||||| ||||||||||| ||||    
T  45593630 tctcacaaagcttatgtcagtaatataaactcaaataagccaatccaaacaggcct 45593685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 44917471 - 44917441
Alignment:
Q  40 ataaactcaaataagtcaatccaaacatgcc 70  Q
    |||||||||||||||||||||||||||||||    
T  44917471 ataaactcaaataagtcaatccaaacatgcc 44917441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 47134706 - 47134677
Alignment:
Q  37 taaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||||||||||||||||||    
T  47134706 taaataaactcaaataagtcaatccaaaca 47134677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 15321742 - 15321690
Alignment:
Q  27 cttatgtcactaaataaactcaaataagtcaatccaaacatgccttaagtaga 79  Q
    |||| |||| ||||||| |||||||||||||||||| |||||| ||| |||||    
T  15321742 cttaagtcagtaaataagctcaaataagtcaatccacacatgcgttatgtaga 15321690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 21405122 - 21405073
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||||||| || |||| ||||||||||||||||||||||    
T  21405122 tctcacaaaacttatgtcagtatataagctcaaataagtcaatccaaaca 21405073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 6538616 - 6538665
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||| ||||||||| ||||| ||||||||||||||| |||||||||||    
T  6538616 tctcaccaaacttatgccactacataaactcaaataagacaatccaaaca 6538665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 6536716 - 6536767
Alignment:
Q  19 tcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgcc 70  Q
    ||||||||||||||||| ||  ||||||||||||| | ||||||||||||||    
T  6536716 tcacaaaacttatgtcagtaggtaaactcaaataatttaatccaaacatgcc 6536767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 34404691 - 34404645
Alignment:
Q  20 cacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||||||||| |  |||||||||||||||| ||||||||||    
T  34404691 cacaaaacttatgtcagttgataaactcaaataagtaaatccaaaca 34404645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 1231256 - 1231215
Alignment:
Q  28 ttatgtcactaaataaactcaaataagtcaatccaaacatgc 69  Q
    |||||||| || |||||||||||||| |||||||||||||||    
T  1231256 ttatgtcaatagataaactcaaataaatcaatccaaacatgc 1231215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 9911851 - 9911802
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||||||| | || || |||||||||||||| ||||||||||||    
T  9911851 tctcacaaaacttacgacattagataaactcaaataaatcaatccaaaca 9911802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 29249515 - 29249548
Alignment:
Q  37 taaataaactcaaataagtcaatccaaacatgcc 70  Q
    ||||||| ||||||||||||||||||||||||||    
T  29249515 taaataagctcaaataagtcaatccaaacatgcc 29249548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 281807 - 281767
Alignment:
Q  26 acttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||| |||| ||||| ||||||||||||||||    
T  281807 acttatgtcactacataatctcaagtaagtcaatccaaaca 281767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 3525235 - 3525275
Alignment:
Q  26 acttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||| ||||||| |||| ||||||||||||||    
T  3525235 acttatgtcactagataaacttaaattagtcaatccaaaca 3525275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 4163261 - 4163309
Alignment:
Q  23 aaaacttatgtcactaaataaactcaaataagtcaatccaaacatgcct 71  Q
    |||||||||| || || |||| |||||||||| ||||||||||||||||    
T  4163261 aaaacttatgccagtagataagctcaaataagccaatccaaacatgcct 4163309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 4224882 - 4224930
Alignment:
Q  23 aaaacttatgtcactaaataaactcaaataagtcaatccaaacatgcct 71  Q
    |||||||||| || || |||| |||||||||| ||||||||||||||||    
T  4224882 aaaacttatgccagtagataagctcaaataagccaatccaaacatgcct 4224930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 30536924 - 30536884
Alignment:
Q  26 acttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||| | || |||||||||||||||||||||||||||    
T  30536924 acttatgtaagtagataaactcaaataagtcaatccaaaca 30536884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 33943375 - 33943411
Alignment:
Q  21 acaaaacttatgtcactaaataaactcaaataagtca 57  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  33943375 acaaaacttatgtcaataaataaacttaaataagtca 33943411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 41336862 - 41336911
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||||| | || |||||||||||||||||||||||||||    
T  41336862 tctcacaaaacttatgtgagtagataaactcaaataagtcaatccaaaca 41336911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 27043796 - 27043749
Alignment:
Q  19 tcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||||| || |||| ||||||||||||||||||||||    
T  27043796 tcacaaaacttatgtcagtagataagctcaaataagtcaatccaaaca 27043749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 52315165 - 52315118
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaa 64  Q
    |||||||||||||| |||| || |||||||||||||||||||||||||    
T  52315165 tctcacaaaacttacgtcagtagataaactcaaataagtcaatccaaa 52315118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 17822833 - 17822776
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgccttaa 74  Q
    ||||||| ||||||||||| || |||| ||||||||||| |||||||||| |||||||    
T  17822833 tctcacagaacttatgtcagtagataagctcaaataagttaatccaaacaggccttaa 17822776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 44638174 - 44638141
Alignment:
Q  37 taaataaactcaaataagtcaatccaaacatgcc 70  Q
    ||||||||||||||||||||||||||||||||||    
T  44638174 taaataaactcaaataagtcaatccaaacatgcc 44638141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 54575561 - 54575512
Alignment:
Q  27 cttatgtcactaaataaactcaaataagtcaatccaaacatgccttaagt 76  Q
    ||||||||  ||||||||||||||||||||||||||||||| || |||||    
T  54575561 cttatgtctataaataaactcaaataagtcaatccaaacataccctaagt 54575512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 15173271 - 15173223
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaac 65  Q
    ||||||||||||||||||| || ||||  ||||||||||||||||||||    
T  15173271 tctcacaaaacttatgtcagtagataagttcaaataagtcaatccaaac 15173223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 37575881 - 37575842
Alignment:
Q  40 ataaactcaaataagtcaatccaaacatgccttaagtaga 79  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  37575881 ataaactcaaataagtcaatccaaacaagcctttagtaga 37575842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 55437180 - 55437227
Alignment:
Q  19 tcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||||||| || || ||||||||||||||| |||||||||||    
T  55437180 tcacaaaacttatggcagtagataaactcaaataagccaatccaaaca 55437227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 42403988 - 42403942
Alignment:
Q  20 cacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||||||||| |  |||| ||||||||||||||||||||||    
T  42403988 cacaaaacttatgtcagttgataagctcaaataagtcaatccaaaca 42403942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 8705043 - 8705092
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||||||| || |||| ||||||| || |||||||||||    
T  8705043 tctcacaaaacttatgtcaatagataagctcaaatgagccaatccaaaca 8705092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 11155170 - 11155141
Alignment:
Q  37 taaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||||||||||||||||||    
T  11155170 taaataaactcaaataagtcaatccaaaca 11155141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 24169365 - 24169414
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||||||||| || || |||||||| |||||| |||||||||||    
T  24169365 tctcacaaaacttatgccagtagataaactctaataagccaatccaaaca 24169414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 25571369 - 25571410
Alignment:
Q  25 aacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||| || ||||||||||||||| |||||||||||    
T  25571369 aacttatgtcagtagataaactcaaataagccaatccaaaca 25571410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 29774342 - 29774391
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||   |||| ||||||||||||||||||||| ||||||||    
T  29774342 tctcacaaaactctagtcagtaaataaactcaaataagtcattccaaaca 29774391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 32765009 - 32765050
Alignment:
Q  28 ttatgtcactaaataaactcaaataagtcaatccaaacatgc 69  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||    
T  32765009 ttatgtcactagataaactcatataaggcaatccaaacatgc 32765050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 54426145 - 54426194
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||||||||| || || |||| |||||||||| |||||||||||    
T  54426145 tctcacaaaacttatgccagtagataagctcaaataagccaatccaaaca 54426194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 55414452 - 55414527
Alignment:
Q  85 tcataagttctcaaagataacttatgacaacaacttatagaagcttatacaaaaacaaaataaacttaattttatctttt 164  Q
    |||||||||||| |||||||||||||| ||||| ||||   ||| ||| |||||| ||||| ||||| ||||||||||||    
T  55414452 tcataagttctccaagataacttatgaaaacaatttat---agcatatgcaaaaa-aaaattaactttattttatctttt 55414527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 55870299 - 55870259
Alignment:
Q  28 ttatgtcactaaataaactcaaataagtcaatccaaacatg 68  Q
    |||||||| || |||||||||||||||| ||||||||||||    
T  55870299 ttatgtcattagataaactcaaataagttaatccaaacatg 55870259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 1830151 - 1830200
Alignment:
Q  27 cttatgtcactaaataaactcaaataagtcaatccaaacatgccttaagt 76  Q
    ||||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  1830151 cttatgtcagtaaataaactcaaataagtcaatccaaacaggccctaagt 1830200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 2416417 - 2416468
Alignment:
Q  19 tcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgcc 70  Q
    ||||||||||||||| | || ||||||||||||||||||||| |||||||||    
T  2416417 tcacaaaacttatgttagtagataaactcaaataagtcaatctaaacatgcc 2416468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 10619188 - 10619139
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||| ||||| || |||||||||||| ||||||||||||||    
T  10619188 tctcacaaaacttgtgtcagtagataaactcaaatgagtcaatccaaaca 10619139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 15305778 - 15305835
Alignment:
Q  19 tcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgccttaagt 76  Q
    ||||||||||||||||| || |||| |||||||||| ||||||||||| ||| |||||    
T  15305778 tcacaaaacttatgtcaatagataagctcaaataagccaatccaaacaggccctaagt 15305835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 18179051 - 18179100
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||||| | || |||| ||||||||||||||||||||||    
T  18179051 tctcacaaaacttatgttagtagataagctcaaataagtcaatccaaaca 18179100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 30331853 - 30331902
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||||||| || |||| || |||||||||||||||||||    
T  30331853 tctcacaaaacttatgtcagtagataagctgaaataagtcaatccaaaca 30331902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 44600626 - 44600678
Alignment:
Q  18 ctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgcc 70  Q
    |||||||||||||||| | |  ||||||||||||||| |||||||||||||||    
T  44600626 ctcacaaaacttatgtgagtgcataaactcaaataagccaatccaaacatgcc 44600678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 42419895 - 42419942
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaa 64  Q
    ||||| |||||||||||||  | |||||||||||||||||||||||||    
T  42419895 tctcaaaaaacttatgtcagaagataaactcaaataagtcaatccaaa 42419942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 44590126 - 44590173
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaa 64  Q
    ||||||||||||||||||  || ||||||||||||||| |||||||||    
T  44590126 tctcacaaaacttatgtctatagataaactcaaataagccaatccaaa 44590173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 37419612 - 37419582
Alignment:
Q  40 ataaactcaaataagtcaatccaaacatgcc 70  Q
    |||||||||||||||||||||||||||||||    
T  37419612 ataaactcaaataagtcaatccaaacatgcc 37419582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 3312179 - 3312228
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||||||| |||| || |||| |||||||||| |||||||||||    
T  3312179 tctcacaaaacttacgtcagtagataagctcaaataagccaatccaaaca 3312228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 7928266 - 7928217
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||| ||||||||||| || |||| |||||||||| |||||||||||    
T  7928266 tctcacacaacttatgtcaatagataagctcaaataagccaatccaaaca 7928217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 20952461 - 20952510
Alignment:
Q  21 acaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgcc 70  Q
    ||||||||| || || || |||| ||||||||||||||||||||||||||    
T  20952461 acaaaacttttgccagtatataagctcaaataagtcaatccaaacatgcc 20952510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 27317481 - 27317530
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||| ||||||||||||  || |||| ||||||||||||||||||||||    
T  27317481 tctcataaaacttatgtcggtagataagctcaaataagtcaatccaaaca 27317530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 40059418 - 40059381
Alignment:
Q  28 ttatgtcactaaataaactcaaataagtcaatccaaac 65  Q
    |||||||| || ||||||||||||||||||||||||||    
T  40059418 ttatgtcagtagataaactcaaataagtcaatccaaac 40059381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 40085318 - 40085281
Alignment:
Q  28 ttatgtcactaaataaactcaaataagtcaatccaaac 65  Q
    |||||||| || ||||||||||||||||||||||||||    
T  40085318 ttatgtcagtagataaactcaaataagtcaatccaaac 40085281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 176
Target Start/End: Complemental strand, 41407336 - 41407252
Alignment:
Q  89 aagttctcaaagataacttatgacaacaacttatagaagcttatacaaaaacaaaataaacttaattttatcttttgctacagaaata 176  Q
    ||||||||||||| ||||||| | || ||||||||| |   ||||||||||  || | ||||| ||||||||||||| ||||||||||    
T  41407336 aagttctcaaagaaaacttataaaaataacttatagca---tatacaaaaaacaatttaactttattttatcttttggtacagaaata 41407252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 42659179 - 42659130
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||||||||| || ||||||| |||||||||| ||| |||||||    
T  42659179 tctcacaaaacttatgccagtaaataagctcaaataagccaacccaaaca 42659130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 7103428 - 7103392
Alignment:
Q  30 atgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||| || |||||||||||||||||||||||||||    
T  7103428 atgtcaatagataaactcaaataagtcaatccaaaca 7103392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 43910960 - 43910932
Alignment:
Q  38 aaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||||||||||||||||||||||    
T  43910960 aaataaactcaaataagtcaatccaaaca 43910932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 37617433 - 37617382
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatg 68  Q
    |||||||||||||| | || || |||||||||||||||||||||||||||||    
T  37617433 tctcacaaaacttacggcaatagataaactcaaataagtcaatccaaacatg 37617382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 3233983 - 3233934
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||||||| | ||||| |||| ||||||||||||||||||||||    
T  3233983 tctcacaaaacttacggcactagataagctcaaataagtcaatccaaaca 3233934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 24334297 - 24334345
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaac 65  Q
    ||||||||||||||||||  |  ||||||||||||||||||||||||||    
T  24334297 tctcacaaaacttatgtccgttgataaactcaaataagtcaatccaaac 24334345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 28467555 - 28467586
Alignment:
Q  37 taaataaactcaaataagtcaatccaaacatg 68  Q
    ||||||||||||||||||||||||||||||||    
T  28467555 taaataaactcaaataagtcaatccaaacatg 28467586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 49938849 - 49938892
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatc 60  Q
    |||||||||||||||| ||| | |||||||||||||||||||||    
T  49938849 tctcacaaaacttatgccacgatataaactcaaataagtcaatc 49938892  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 50644223 - 50644164
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgccttaagt 76  Q
    ||||||||||| ||||| | || |||| ||||||||||||||||||||||  ||||||||    
T  50644223 tctcacaaaacatatgttagtagataagctcaaataagtcaatccaaacaacccttaagt 50644164  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 7244622 - 7244576
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaa 63  Q
    ||||||||||||||| ||| || ||||||||||||| ||||||||||    
T  7244622 tctcacaaaacttatatcaatagataaactcaaataggtcaatccaa 7244576  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 39976176 - 39976130
Alignment:
Q  19 tcacaaaacttatgtcactaaataaactcaaataagtcaatccaaac 65  Q
    ||||||||||||||||| || |||| ||||||||||||| |||||||    
T  39976176 tcacaaaacttatgtcagtagataatctcaaataagtcagtccaaac 39976130  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 27146223 - 27146174
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||||||||||||| || || |||| ||||||| ||||||||||||||    
T  27146223 tctcacaaaacttatgccaatagataagctcaaatcagtcaatccaaaca 27146174  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 33204362 - 33204313
Alignment:
Q  17 tctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    ||||||||||||||||||| || |||| |||||||||||| ||| |||||    
T  33204362 tctcacaaaacttatgtcagtagataagctcaaataagtcgatctaaaca 33204313  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 49888805 - 49888730
Alignment:
Q  85 tcataagttctcaaagataacttatgacaacaacttatagaagcttatacaaaaacaaaataaacttaattttatctttt 164  Q
    |||||||||||| |||||| ||||||| ||||||| ||   ||||||||| ||||| || ||||||| ||||||||||||    
T  49888805 tcataagttctctaagatagcttatgaaaacaactaat---agcttatacgaaaac-aattaaactttattttatctttt 49888730  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 5886937 - 5886905
Alignment:
Q  40 ataaactcaaataagtcaatccaaacatgcctt 72  Q
    |||| ||||||||||||||||||||||||||||    
T  5886937 ataagctcaaataagtcaatccaaacatgcctt 5886905  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 9656630 - 9656590
Alignment:
Q  147 aacttaattttatcttttgctacagaaataaatagcttata 187  Q
    ||||| ||||||| |||||||| ||||||||||||||||||    
T  9656630 aactttattttattttttgctatagaaataaatagcttata 9656590  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 33976293 - 33976329
Alignment:
Q  30 atgtcactaaataaactcaaataagtcaatccaaaca 66  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  33976293 atgtcattaaataagctcaaataagtcaatccaaaca 33976329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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