View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21026_low_9 (Length: 244)

Name: NF21026_low_9
Description: NF21026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21026_low_9
NF21026_low_9
[»] chr1 (20 HSPs)
chr1 (23-228)||(11890894-11891099)
chr1 (24-228)||(11881661-11881865)
chr1 (23-228)||(11903989-11904194)
chr1 (24-228)||(11881529-11881733)
chr1 (24-228)||(11904518-11904722)
chr1 (24-228)||(11904122-11904326)
chr1 (24-228)||(11904254-11904458)
chr1 (24-228)||(11904386-11904590)
chr1 (82-228)||(11881455-11881601)
chr1 (24-178)||(11881793-11881947)
chr1 (24-178)||(11891027-11891181)
chr1 (24-193)||(11904650-11904819)
chr1 (82-228)||(11890821-11890967)
chr1 (135-228)||(11903969-11904062)
chr1 (108-199)||(52819163-52819254)
chr1 (93-154)||(52819604-52819665)
chr1 (96-151)||(52819283-52819338)
chr1 (93-155)||(52819399-52819461)
chr1 (82-154)||(52819772-52819844)
chr1 (93-154)||(52819484-52819545)
[»] chr6 (4 HSPs)
chr6 (114-154)||(12179191-12179231)
chr6 (112-157)||(12163363-12163408)
chr6 (121-154)||(12179165-12179198)
chr6 (121-154)||(12192384-12192417)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 11890894 - 11891099
Alignment:
Q  23 cgtccattattactcacctccatattactacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||    
T  11890894 cgtccattattactcacctccatattactacaagtcacctcctccccccgtgaaagcggcaccaactccttactactacaaatcacctccacctcccgca 11890993  T
Q  123 ccagtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactc 222  Q
    ||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||  ||||||||||    
T  11890994 ccagtttacaagtacaactccccacctccgccagtccattactattcacctccatacacctataagtcacctcctcctcctgtgaaagcagcaccaactc 11891093  T
Q  223 catact 228  Q
    | ||||    
T  11891094 cttact 11891099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 11881661 - 11881865
Alignment:
Q  24 gtccattattactcacctccatattactacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcac 123  Q
    ||||||||||| ||||| ||||||  ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||    
T  11881661 gtccattattattcaccaccatatacctataagtcacctcctccccctgtgaaagcggcaccaactccttactactacaaatcacctccacctcccgcac 11881760  T
Q  124 cagtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactcc 223  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11881761 cggtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctacaagtcacctcctccccctgtgaaagtggcaccaactcc 11881860  T
Q  224 atact 228  Q
     ||||    
T  11881861 ttact 11881865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 11903989 - 11904194
Alignment:
Q  23 cgtccattattactcacctccatattactacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagca 122  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| || || |||    
T  11903989 cgtccattattactcacctccatattactacaagtcaccccctccccctgtgaaagcggcaccaactccttactactacaaatcacctccaccacccgca 11904088  T
Q  123 ccagtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactc 222  Q
    || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||  |||||||||||    
T  11904089 ccggtttacaagtacaactccccacctccaccagtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactc 11904188  T
Q  223 catact 228  Q
    | ||||    
T  11904189 cttact 11904194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 11881529 - 11881733
Alignment:
Q  24 gtccattattactcacctccatattactacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcac 123  Q
    ||||||||||| |||||||||||   ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || || ||||    
T  11881529 gtccattattattcacctccatacacctacaagtcacctcctccccctgtgaaagcggcaccaactccttactactacaaatcacctccaccacccgcac 11881628  T
Q  124 cagtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactcc 223  Q
    | ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11881629 cggtttacaagtacaactcaccccctccaccggtccattattattcaccaccatatacctataagtcacctcctccccctgtgaaagcggcaccaactcc 11881728  T
Q  224 atact 228  Q
     ||||    
T  11881729 ttact 11881733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 11904518 - 11904722
Alignment:
Q  24 gtccattattactcacctccatattactacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcac 123  Q
    ||||||||||| ||||| ||||||  |||||||||||||||||| || |||||| | |||||||||||||||||||| ||||||||||| || || ||||    
T  11904518 gtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactataaatcacctccaccacccgcac 11904617  T
Q  124 cagtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactcc 223  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  11904618 cggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctccccctgtgaaagtagcaccaactcc 11904717  T
Q  224 atact 228  Q
    |||||    
T  11904718 atact 11904722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 11904122 - 11904326
Alignment:
Q  24 gtccattattactcacctccatattactacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcac 123  Q
    ||||||||||| ||||| ||||||  |||||||||||||||||| || |||||| | |||||||||||||||||||| ||||||||||| || || ||||    
T  11904122 gtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactataaatcacctccaccacccgcac 11904221  T
Q  124 cagtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactcc 223  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||  ||||||||||||    
T  11904222 cggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactcc 11904321  T
Q  224 atact 228  Q
     ||||    
T  11904322 ttact 11904326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 11904254 - 11904458
Alignment:
Q  24 gtccattattactcacctccatattactacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcac 123  Q
    ||||||||||| ||||| ||||||  |||||||||||||||||| || |||||| | |||||||||||||||||||| ||||||||||| || || ||||    
T  11904254 gtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactataaatcacctccaccacccgcac 11904353  T
Q  124 cagtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactcc 223  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||  ||||||||||||    
T  11904354 cggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactcc 11904453  T
Q  224 atact 228  Q
     ||||    
T  11904454 ttact 11904458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 11904386 - 11904590
Alignment:
Q  24 gtccattattactcacctccatattactacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcac 123  Q
    ||||||||||| ||||| ||||||  |||||||||||||||||| || |||||| | |||||||||||||||||||| ||||||||||| || || ||||    
T  11904386 gtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactccttactactataaatcacctccaccacccgcac 11904485  T
Q  124 cagtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactcc 223  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||  ||||||||||||    
T  11904486 cggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctccacctgtgaaaacggcaccaactcc 11904585  T
Q  224 atact 228  Q
     ||||    
T  11904586 ttact 11904590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 11881455 - 11881601
Alignment:
Q  82 caccaactccttactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacctccaccggtccattattattcacctccatatac 181  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||    
T  11881455 caccaactccttactactacaaatcacctccacctccctcaccagtttacaaatacaactcaccacctccaccggtccattattattcacctccatacac 11881554  T
Q  182 ctataagtcacctcctccccctgtgaaagtggcaccaactccatact 228  Q
    ||| ||||||||||||||||||||||||| |||||||||||| ||||    
T  11881555 ctacaagtcacctcctccccctgtgaaagcggcaccaactccttact 11881601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 11881793 - 11881947
Alignment:
Q  24 gtccattattactcacctccatattactacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcac 123  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||| || || ||||    
T  11881793 gtccattattattcacctccatatacctacaagtcacctcctccccctgtgaaagtggcaccaactccttactactacaaatcacctccaccacccgcac 11881892  T
Q  124 cagtttacaagtacaactccccacctccaccggtccattattattcacctccata 178  Q
    | ||||||||||||||||| |||||||||||||||||||||||||| || |||||    
T  11881893 cggtttacaagtacaactcaccacctccaccggtccattattattctccaccata 11881947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 11891027 - 11891181
Alignment:
Q  24 gtccattattactcacctccatattactacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcac 123  Q
    |||||||| || |||||||||||   ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  11891027 gtccattactattcacctccatacacctataagtcacctcctcctcctgtgaaagcagcaccaactccttactactacaaatcacctccacctcccgcac 11891126  T
Q  124 cagtttacaagtacaactccccacctccaccggtccattattattcacctccata 178  Q
    | ||||||||||||||||| |||||||||||||||||||||||||| || |||||    
T  11891127 cggtttacaagtacaactcaccacctccaccggtccattattattctccaccata 11891181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 11904650 - 11904819
Alignment:
Q  24 gtccattattactcacctccatattactacaagtcacctcctccccccgtgaaagcagcaccaactccttactactacaaatcacctcctcctccagcac 123  Q
    ||||||||||| ||||| ||||||  ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| ||||| ||||    
T  11904650 gtccattattattcaccaccatatacctacaagtcacctcctccccctgtgaaagtagcaccaactccatactactacaaatcacctccacctcctgcac 11904749  T
Q  124 cagtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctataagtcacc 193  Q
    | ||||| ||||||||||| || |||||||| |||||||||||||| ||||||||   ||||||||||||    
T  11904750 cggtttataagtacaactcacctcctccaccagtccattattattctcctccatactactataagtcacc 11904819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 11890821 - 11890967
Alignment:
Q  82 caccaactccttactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacctccaccggtccattattattcacctccatatac 181  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||      
T  11890821 caccaactccttactactacaaatcacctccacctccctcaccagtttacaagtataactcaccacctccacccgtccattattactcacctccatatta 11890920  T
Q  182 ctataagtcacctcctccccctgtgaaagtggcaccaactccatact 228  Q
    ||| ||||||||||||||||| ||||||| |||||||||||| ||||    
T  11890921 ctacaagtcacctcctccccccgtgaaagcggcaccaactccttact 11890967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 11903969 - 11904062
Alignment:
Q  135 tacaactccccacctccaccggtccattattattcacctccatatacctataagtcacctcctccccctgtgaaagtggcaccaactccatact 228  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||  ||| |||||||| |||||||||||||||| |||||||||||| ||||    
T  11903969 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctccccctgtgaaagcggcaccaactccttact 11904062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 52819254 - 52819163
Alignment:
Q  108 cctcctcctccagcaccagtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctataagtcacctcctcc 199  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||||||| || |||||   |||||||||||| |||||    
T  52819254 cctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctcc 52819163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 52819665 - 52819604
Alignment:
Q  93 tactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacctccacc 154  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||| || |||||||||||    
T  52819665 tactactacaagtcacctcctcctccaacaccaatttacaagtacaattcaccacctccacc 52819604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 52819338 - 52819283
Alignment:
Q  96 tactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacctcc 151  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||    
T  52819338 tactacaagtcacctcctcctccaacaccagtttacaagtacaattcaccacctcc 52819283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 52819461 - 52819399
Alignment:
Q  93 tactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacctccaccg 155  Q
    ||||||||||| ||||| ||||||||| ||||||||||||| ||||| || ||||||||||||    
T  52819461 tactactacaattcaccacctcctccaacaccagtttacaaatacaattcaccacctccaccg 52819399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 52819844 - 52819772
Alignment:
Q  82 caccaactccttactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacctccacc 154  Q
    |||||||||||||||||||||| ||||||||||||||  |||| ||||| |  ||||| || |||||||||||    
T  52819844 caccaactccttactactacaagtcacctcctcctccttcaccggtttatatatacaagtcaccacctccacc 52819772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 52819545 - 52819484
Alignment:
Q  93 tactactacaaatcacctcctcctccagcaccagtttacaagtacaactccccacctccacc 154  Q
    ||||| ||||| ||||||||||| ||| ||||||||||| | ||||| || |||||||||||    
T  52819545 tactattacaagtcacctcctccaccatcaccagtttactactacaagtctccacctccacc 52819484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 12179191 - 12179231
Alignment:
Q  114 cctccagcaccagtttacaagtacaactccccacctccacc 154  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  12179191 cctccaccaccagtttacaagtacaagtccccacctccacc 12179231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 12163363 - 12163408
Alignment:
Q  112 ctcctccagcaccagtttacaagtacaactccccacctccaccggt 157  Q
    |||||||| ||||||||||||||||||| || || |||||||||||    
T  12163363 ctcctccaccaccagtttacaagtacaaatcacctcctccaccggt 12163408  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 12179165 - 12179198
Alignment:
Q  121 caccagtttacaagtacaactccccacctccacc 154  Q
    ||||||||||||||||||| ||||||||||||||    
T  12179165 caccagtttacaagtacaagtccccacctccacc 12179198  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 12192384 - 12192417
Alignment:
Q  121 caccagtttacaagtacaactccccacctccacc 154  Q
    ||||||||||||||||||| ||||||||||||||    
T  12192384 caccagtttacaagtacaagtccccacctccacc 12192417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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