View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21027_high_1 (Length: 517)
Name: NF21027_high_1
Description: NF21027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21027_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 511
Target Start/End: Complemental strand, 32126108 - 32125615
Alignment:
| Q |
18 |
cttctgtggaccccatcttagagtcttctgtaacctcagatttgtcagagaaatctaacagcagtggacttagcacattcttttcagattcaacattctc |
117 |
Q |
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| T |
32126108 |
cttctgtggaccccatcttagagtcttctgtaacctcagatttgtcagagaaatctaacagcagtggacttagcacattcttttcagattcaacactctc |
32126009 |
T |
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| Q |
118 |
ttgattcagcacctaataacaaaattcaaatacaaaaaatcaatctactatttgacaatctactaaaaatatatgtaatacataaaatacattggtttta |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32126008 |
ttgattcagcacctaataacaaaaatcaaatacaaaaaatcaatctactatttgacaatctactaaaaatatatgtaatacataaaatacattggtttta |
32125909 |
T |
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| Q |
218 |
acaagactgggacaaacctgaggaatgagttgttcttgaacaacagaagaaggtgaaaactcaatgaaaccagtggcagtgttgtgcacattgagaattt |
317 |
Q |
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| T |
32125908 |
agaagactgtgacaaacctgaggaatgagttgttcttgaacaacagaagaaggtgaaaactcagtgaaaccaatggcagtgtcgtgaacattggggattt |
32125809 |
T |
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| Q |
318 |
gaggggtgtttgcaggagttggggcaagaagttgcattggagagttaacaaattgaagaaaaggacgaacatccattgtgagtttagaaatctcagcttc |
417 |
Q |
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| T |
32125808 |
gaggggtgtttgcaggagttggggcaagaagttgcattggagagttaacaaattgaagaaaaggacgaacatccattgtgagtttagaaatctcagcttc |
32125709 |
T |
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| Q |
418 |
ttcttcaactttctgcaaaagggtcttcacttgtcccctcaacaaagcttcaccagaaccaggagtcttcttcacccggcttcccctttgcttc |
511 |
Q |
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| T |
32125708 |
ttcttcaactttctgcaaaagggtcttcacttgtcccctcaacaaagcttcaccagaaccaggagtcttcttcacccggcttcctctttgcttc |
32125615 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 507
Target Start/End: Original strand, 8621485 - 8621576
Alignment:
| Q |
416 |
tcttcttcaactttctgcaaaagggtcttcacttgtcccctcaacaaagcttcaccagaaccaggagtcttcttcacccggcttcccctttg |
507 |
Q |
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||||||||||| |||||| ||||||||||||||| ||||||| ||| ||||||||||| || || || |||||||| || ||||| ||||| |
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| T |
8621485 |
tcttcttcaaccatctgcataagggtcttcacttgacccctcagcaaggcttcaccagatcctggtgtgttcttcacacgacttcctctttg |
8621576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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