View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21027_low_2 (Length: 443)
Name: NF21027_low_2
Description: NF21027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21027_low_2 |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold1694 (1 HSPs) |
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| [»] scaffold0350 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 161 - 443
Target Start/End: Original strand, 53879313 - 53879582
Alignment:
| Q |
161 |
ctatactcacaaaatttgtatcaaaagttaagttaatattgtgaacaaaattggaactaaagtgggtaaagggtcaaaaactattgaatcgaaaactcct |
260 |
Q |
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| T |
53879313 |
ctatactcacaaaatttgtatcaaaagttaagttaatattgtgaactaaattggaactaaagtgggtaaagggtcaaaaactattgaatcgaaaactcct |
53879412 |
T |
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| Q |
261 |
tcaaatttttacttaacttaactttagttctaaaatgtgaaaaactattgggtcgaggaatgctaggacagttggtcacacactctcttttatacactct |
360 |
Q |
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| T |
53879413 |
tcaaatttttaattaacttaactttagttctaaaatgtgaaaaactattgggtcgaggaatgctaggacagttggtcacacactctct------------ |
53879500 |
T |
|
| Q |
361 |
cttagtgtatggttccacgtgtccctccttttcaatttttatttgctaaccggttcggcaggtagagatatttttcaaacact |
443 |
Q |
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| T |
53879501 |
-taagtgtatggttccacgtgtccctccttttcaatttttatttgctaaccggttcagcaggtagagatatttttcaaacact |
53879582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 53879148 - 53879226
Alignment:
| Q |
4 |
caaaggcaaatactatatttttcgttcaaatacaactatgatatggacaatgcataatgtatgtaaggtctttaaaccc |
82 |
Q |
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| T |
53879148 |
caaagacaaatactatatttttcgttcaaatacaaatatgatatgaaccatgcataatatatgtaaggtctttgaaccc |
53879226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 73
Target Start/End: Original strand, 8607143 - 8607174
Alignment:
| Q |
42 |
tgatatggacaatgcataatgtatgtaaggtc |
73 |
Q |
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| T |
8607143 |
tgatatggacaatgcataatgtatgtaaggtc |
8607174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 9783915 - 9783947
Alignment:
| Q |
42 |
tgatatggacaatgcataatgtatgtaaggtct |
74 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
9783915 |
tgatatggacaatgcataatatatgtaaggtct |
9783947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1694 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1694
Description:
Target: scaffold1694; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 171 - 203
Alignment:
| Q |
42 |
tgatatggacaatgcataatgtatgtaaggtct |
74 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
171 |
tgatatggacaatgcataatgtatgcaaggtct |
203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0350 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0350
Description:
Target: scaffold0350; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 1264 - 1296
Alignment:
| Q |
42 |
tgatatggacaatgcataatgtatgtaaggtct |
74 |
Q |
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| T |
1264 |
tgatatggacaatgcataatatatgtaaggtct |
1296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 6038320 - 6038288
Alignment:
| Q |
42 |
tgatatggacaatgcataatgtatgtaaggtct |
74 |
Q |
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| T |
6038320 |
tgatatggacaatgcataatatatgtaaggtct |
6038288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 29431475 - 29431507
Alignment:
| Q |
42 |
tgatatggacaatgcataatgtatgtaaggtct |
74 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
29431475 |
tgataaggacaatgcataatgtatgtaaggtct |
29431507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 7827524 - 7827556
Alignment:
| Q |
42 |
tgatatggacaatgcataatgtatgtaaggtct |
74 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
7827524 |
tgatatggacaatgcataatatatgtaaggtct |
7827556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 7829912 - 7829944
Alignment:
| Q |
42 |
tgatatggacaatgcataatgtatgtaaggtct |
74 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
7829912 |
tgatatggacaatgcataatatatgtaaggtct |
7829944 |
T |
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