View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21027_low_3 (Length: 343)

Name: NF21027_low_3
Description: NF21027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21027_low_3
NF21027_low_3
[»] chr4 (15 HSPs)
chr4 (84-343)||(18108455-18108710)
chr4 (18-87)||(18108758-18108827)
chr4 (18-87)||(14714143-14714212)
chr4 (18-87)||(14775823-14775892)
chr4 (18-87)||(15153615-15153684)
chr4 (18-87)||(14556927-14556996)
chr4 (18-86)||(13277219-13277287)
chr4 (18-86)||(13292597-13292665)
chr4 (84-163)||(14557044-14557124)
chr4 (84-143)||(15153732-15153791)
chr4 (84-163)||(13277335-13277415)
chr4 (26-84)||(1658660-1658718)
chr4 (84-163)||(13292713-13292793)
chr4 (26-76)||(18567017-18567067)
chr4 (39-84)||(14022430-14022475)
[»] chr3 (26 HSPs)
chr3 (84-343)||(14683262-14683517)
chr3 (84-304)||(7341575-7341798)
chr3 (84-304)||(7396321-7396544)
chr3 (84-343)||(13299578-13299835)
chr3 (84-342)||(13310236-13310492)
chr3 (88-343)||(10792263-10792516)
chr3 (88-343)||(10778745-10778998)
chr3 (88-343)||(11887027-11887275)
chr3 (18-87)||(7341458-7341527)
chr3 (18-87)||(7396204-7396273)
chr3 (18-87)||(11887327-11887396)
chr3 (18-87)||(14683145-14683214)
chr3 (19-87)||(10792569-10792637)
chr3 (18-87)||(10779050-10779119)
chr3 (18-87)||(10139829-10139898)
chr3 (18-87)||(10171196-10171265)
chr3 (18-87)||(13299461-13299530)
chr3 (18-87)||(13310119-13310188)
chr3 (84-163)||(10139701-10139781)
chr3 (84-163)||(10171068-10171148)
chr3 (19-80)||(12491986-12492047)
chr3 (25-84)||(12021475-12021534)
chr3 (18-84)||(12844571-12844637)
chr3 (19-84)||(13023942-13024007)
chr3 (26-76)||(132461-132511)
chr3 (42-84)||(22445013-22445055)
[»] chr7 (25 HSPs)
chr7 (84-304)||(14323821-14324043)
chr7 (84-304)||(14346014-14346236)
chr7 (84-304)||(14035984-14036206)
chr7 (84-324)||(18141907-18142145)
chr7 (84-276)||(44277783-44277976)
chr7 (84-324)||(18115339-18115577)
chr7 (18-87)||(14323704-14323773)
chr7 (18-87)||(18141791-18141860)
chr7 (18-87)||(14035867-14035936)
chr7 (18-87)||(14345897-14345966)
chr7 (18-87)||(18115223-18115292)
chr7 (18-87)||(18160091-18160160)
chr7 (18-87)||(44277666-44277735)
chr7 (84-163)||(18174978-18175057)
chr7 (19-87)||(15758628-15758696)
chr7 (31-87)||(18174861-18174917)
chr7 (19-87)||(1978218-1978286)
chr7 (84-135)||(15758528-15758579)
chr7 (84-130)||(1978335-1978381)
chr7 (21-76)||(10864182-10864237)
chr7 (25-84)||(18752723-18752782)
chr7 (26-76)||(10827806-10827856)
chr7 (26-76)||(11021598-11021648)
chr7 (26-76)||(40342863-40342913)
chr7 (25-77)||(11989405-11989457)
[»] chr8 (18 HSPs)
chr8 (84-343)||(16668071-16668331)
chr8 (84-294)||(17426213-17426423)
chr8 (84-276)||(20193271-20193464)
chr8 (92-343)||(1735067-1735315)
chr8 (18-87)||(16667954-16668023)
chr8 (18-87)||(17426096-17426165)
chr8 (18-87)||(20193154-20193223)
chr8 (18-87)||(22352013-22352082)
chr8 (18-86)||(25388983-25389051)
chr8 (18-85)||(12821224-12821291)
chr8 (84-143)||(22352130-22352189)
chr8 (84-143)||(12821339-12821398)
chr8 (25-84)||(29708170-29708229)
chr8 (19-80)||(22064656-22064717)
chr8 (84-126)||(25389099-25389141)
chr8 (25-79)||(41438853-41438907)
chr8 (21-76)||(27818260-27818315)
chr8 (26-76)||(22698110-22698160)
[»] scaffold0740 (2 HSPs)
scaffold0740 (84-343)||(5391-5648)
scaffold0740 (18-87)||(5696-5765)
[»] chr2 (27 HSPs)
chr2 (84-294)||(24954148-24954360)
chr2 (84-292)||(24967339-24967549)
chr2 (84-163)||(23190368-23190447)
chr2 (84-163)||(23203984-23204063)
chr2 (84-163)||(23611623-23611702)
chr2 (85-163)||(22633765-22633843)
chr2 (18-87)||(22648641-22648710)
chr2 (84-163)||(22648514-22648593)
chr2 (18-87)||(23190251-23190320)
chr2 (18-87)||(23203867-23203936)
chr2 (18-87)||(23611506-23611575)
chr2 (25-86)||(23615112-23615173)
chr2 (84-163)||(23615228-23615307)
chr2 (25-87)||(24896708-24896770)
chr2 (18-65)||(22633892-22633939)
chr2 (25-76)||(22881018-22881069)
chr2 (25-84)||(31817989-31818048)
chr2 (18-80)||(39227457-39227519)
chr2 (25-77)||(16664690-16664742)
chr2 (26-76)||(22593816-22593866)
chr2 (26-76)||(23803373-23803423)
chr2 (26-76)||(23815003-23815053)
chr2 (26-76)||(23829851-23829901)
chr2 (84-126)||(24896611-24896653)
chr2 (26-76)||(37130477-37130527)
chr2 (240-272)||(22648428-22648460)
chr2 (55-87)||(24963768-24963800)
[»] scaffold0101 (4 HSPs)
scaffold0101 (84-343)||(46383-46640)
scaffold0101 (84-343)||(51021-51278)
scaffold0101 (18-87)||(50904-50973)
scaffold0101 (18-87)||(46266-46335)
[»] chr1 (21 HSPs)
chr1 (84-343)||(22086162-22086419)
chr1 (88-343)||(41383687-41383939)
chr1 (88-343)||(41368780-41369032)
chr1 (18-87)||(41383567-41383636)
chr1 (19-87)||(41368660-41368728)
chr1 (18-87)||(22086467-22086536)
chr1 (18-86)||(31845658-31845726)
chr1 (25-87)||(22794462-22794524)
chr1 (18-87)||(1528648-1528717)
chr1 (18-87)||(22809062-22809131)
chr1 (18-87)||(27561966-27562035)
chr1 (18-87)||(29305286-29305355)
chr1 (18-84)||(22684640-22684706)
chr1 (25-84)||(21137729-21137788)
chr1 (25-84)||(23511684-23511743)
chr1 (26-84)||(4229860-4229918)
chr1 (18-80)||(21310797-21310859)
chr1 (25-84)||(21076634-21076693)
chr1 (84-143)||(31845774-31845833)
chr1 (83-163)||(27561838-27561919)
chr1 (26-72)||(21168358-21168404)
[»] scaffold0253 (2 HSPs)
scaffold0253 (88-198)||(15442-15553)
scaffold0253 (18-87)||(15321-15390)
[»] scaffold0130 (7 HSPs)
scaffold0130 (84-343)||(28644-28885)
scaffold0130 (84-163)||(39796-39875)
scaffold0130 (25-87)||(28527-28589)
scaffold0130 (18-87)||(39923-39992)
scaffold0130 (25-87)||(29339-29401)
scaffold0130 (84-143)||(29456-29515)
scaffold0130 (220-272)||(39703-39755)
[»] chr6 (19 HSPs)
chr6 (18-87)||(16310099-16310168)
chr6 (25-87)||(23431985-23432047)
chr6 (18-87)||(16209861-16209930)
chr6 (84-163)||(23431851-23431930)
chr6 (25-87)||(23491025-23491087)
chr6 (25-87)||(23496623-23496685)
chr6 (18-87)||(19025386-19025455)
chr6 (18-87)||(19405782-19405851)
chr6 (19-87)||(1557679-1557747)
chr6 (19-87)||(19038429-19038497)
chr6 (19-87)||(30755525-30755593)
chr6 (84-163)||(23490893-23490970)
chr6 (84-163)||(23496491-23496568)
chr6 (84-143)||(16209754-16209813)
chr6 (84-135)||(1557796-1557847)
chr6 (84-130)||(30755642-30755688)
chr6 (83-163)||(19025502-19025583)
chr6 (83-163)||(19038545-19038626)
chr6 (26-76)||(26460597-26460647)
[»] scaffold0064 (3 HSPs)
scaffold0064 (84-163)||(43234-43313)
scaffold0064 (18-87)||(43117-43186)
scaffold0064 (220-272)||(43354-43406)
[»] chr5 (14 HSPs)
chr5 (18-87)||(20506315-20506384)
chr5 (25-87)||(21530379-21530441)
chr5 (18-87)||(21982609-21982678)
chr5 (18-87)||(26274093-26274162)
chr5 (18-71)||(21504705-21504758)
chr5 (32-87)||(21507876-21507931)
chr5 (84-143)||(20506432-20506491)
chr5 (84-143)||(21982726-21982785)
chr5 (26-76)||(20024462-20024512)
chr5 (26-76)||(40932954-40933004)
chr5 (84-143)||(21504598-21504657)
chr5 (84-143)||(21530265-21530324)
chr5 (84-143)||(26274210-26274269)
chr5 (26-76)||(18156219-18156269)
[»] scaffold0323 (2 HSPs)
scaffold0323 (84-163)||(4452-4532)
scaffold0323 (25-87)||(4587-4649)
[»] scaffold0108 (5 HSPs)
scaffold0108 (84-163)||(22964-23043)
scaffold0108 (84-163)||(44140-44219)
scaffold0108 (18-87)||(23091-23160)
scaffold0108 (19-87)||(44268-44336)
scaffold0108 (240-343)||(22796-22903)
[»] scaffold0080 (2 HSPs)
scaffold0080 (18-87)||(2496-2565)
scaffold0080 (83-163)||(2368-2449)
[»] scaffold0040 (2 HSPs)
scaffold0040 (18-87)||(41399-41468)
scaffold0040 (84-163)||(41272-41351)
[»] scaffold0026 (4 HSPs)
scaffold0026 (18-87)||(142215-142284)
scaffold0026 (18-87)||(118365-118434)
scaffold0026 (84-143)||(118482-118541)
scaffold0026 (84-143)||(142332-142391)
[»] scaffold0022 (2 HSPs)
scaffold0022 (84-163)||(58438-58517)
scaffold0022 (18-87)||(58565-58634)
[»] scaffold0282 (2 HSPs)
scaffold0282 (18-87)||(8757-8826)
scaffold0282 (84-126)||(8874-8916)
[»] scaffold0081 (1 HSPs)
scaffold0081 (18-87)||(44259-44328)
[»] scaffold0005 (1 HSPs)
scaffold0005 (18-87)||(63838-63907)
[»] scaffold0001 (9 HSPs)
scaffold0001 (18-87)||(25087-25156)
scaffold0001 (18-87)||(28585-28654)
scaffold0001 (18-86)||(390146-390214)
scaffold0001 (18-87)||(115344-115413)
scaffold0001 (18-87)||(129896-129965)
scaffold0001 (84-143)||(115461-115520)
scaffold0001 (84-130)||(25204-25250)
scaffold0001 (84-130)||(28702-28748)
scaffold0001 (84-130)||(130012-130058)
[»] scaffold0358 (2 HSPs)
scaffold0358 (25-87)||(15786-15848)
scaffold0358 (84-143)||(15672-15731)
[»] scaffold0509 (2 HSPs)
scaffold0509 (18-87)||(1218-1287)
scaffold0509 (18-87)||(7646-7715)
[»] scaffold0046 (1 HSPs)
scaffold0046 (18-87)||(30654-30723)
[»] scaffold0023 (9 HSPs)
scaffold0023 (18-87)||(6655-6724)
scaffold0023 (18-87)||(22683-22752)
scaffold0023 (18-87)||(85070-85139)
scaffold0023 (19-87)||(62210-62278)
scaffold0023 (19-87)||(71388-71456)
scaffold0023 (25-84)||(116477-116536)
scaffold0023 (84-143)||(62102-62161)
scaffold0023 (84-130)||(84976-85022)
scaffold0023 (84-121)||(71302-71339)
[»] scaffold0021 (2 HSPs)
scaffold0021 (18-87)||(18497-18566)
scaffold0021 (18-87)||(28028-28097)
[»] scaffold0304 (2 HSPs)
scaffold0304 (19-87)||(5778-5846)
scaffold0304 (84-121)||(5895-5932)
[»] scaffold0270 (4 HSPs)
scaffold0270 (84-163)||(8194-8274)
scaffold0270 (84-163)||(15324-15404)
scaffold0270 (18-87)||(8077-8146)
scaffold0270 (18-87)||(15207-15276)
[»] scaffold0516 (1 HSPs)
scaffold0516 (36-87)||(11271-11322)
[»] scaffold0019 (4 HSPs)
scaffold0019 (25-87)||(151399-151461)
scaffold0019 (25-87)||(161744-161806)
scaffold0019 (84-126)||(151516-151558)
scaffold0019 (84-126)||(162075-162117)
[»] scaffold0060 (1 HSPs)
scaffold0060 (19-87)||(32141-32209)
[»] scaffold0003 (1 HSPs)
scaffold0003 (21-84)||(33340-33403)
[»] scaffold0362 (1 HSPs)
scaffold0362 (18-84)||(11363-11429)
[»] scaffold0241 (2 HSPs)
scaffold0241 (18-87)||(25145-25214)
scaffold0241 (84-143)||(25038-25097)
[»] scaffold0193 (1 HSPs)
scaffold0193 (18-87)||(26775-26844)
[»] scaffold0053 (1 HSPs)
scaffold0053 (19-84)||(45235-45300)
[»] scaffold0239 (1 HSPs)
scaffold0239 (25-84)||(16995-17054)
[»] scaffold0107 (2 HSPs)
scaffold0107 (36-87)||(32201-32252)
scaffold0107 (84-135)||(29088-29139)
[»] scaffold0013 (2 HSPs)
scaffold0013 (25-84)||(107488-107547)
scaffold0013 (25-84)||(129232-129291)
[»] scaffold0012 (1 HSPs)
scaffold0012 (21-76)||(250092-250147)
[»] scaffold0059 (2 HSPs)
scaffold0059 (25-84)||(68110-68169)
scaffold0059 (25-73)||(76226-76274)
[»] scaffold0423 (2 HSPs)
scaffold0423 (84-126)||(1706-1748)
scaffold0423 (18-57)||(1796-1835)
[»] scaffold0096 (1 HSPs)
scaffold0096 (26-84)||(36396-36454)
[»] scaffold0016 (1 HSPs)
scaffold0016 (25-79)||(200191-200245)
[»] scaffold0770 (1 HSPs)
scaffold0770 (26-76)||(3711-3761)
[»] scaffold0190 (1 HSPs)
scaffold0190 (26-84)||(7494-7552)
[»] scaffold0168 (1 HSPs)
scaffold0168 (26-76)||(1415-1465)
[»] scaffold0151 (1 HSPs)
scaffold0151 (26-76)||(14155-14205)
[»] scaffold0100 (1 HSPs)
scaffold0100 (26-76)||(9055-9105)
[»] scaffold0029 (1 HSPs)
scaffold0029 (26-76)||(102015-102065)
[»] scaffold0216 (1 HSPs)
scaffold0216 (19-84)||(19972-20037)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 84 - 343
Target Start/End: Complemental strand, 18108710 - 18108455
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattc-aaaatcgaaactagccgttcacaaactagccgtttgct 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18108710 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaaatcgaaactagccgttcacaaactagccgtttgct 18108611  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaact-aaaacaacttcttcgattcctgctgaggtagactt 281  Q
    ||||| |||||||||| | || ||     |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| ||||    
T  18108610 aaccgcttggtcttatccacaaga-----agagcgcgtcgacaacttcttttatccgtcgaactaaaaacaacttcttcgattcctgctgaagtacactt 18108516  T
Q  282 gtatttttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    ||||||||||||| ||| |||||| ||| ||| | |||| ||||||||||||||||||||||    
T  18108515 gtatttttcgatggatttctttcacaaagctacgcccca-tttttaggtcaaacccttgact 18108455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 18108758 - 18108827
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18108758 ctgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 18108827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 14714212 - 14714143
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  14714212 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 14714143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 14775892 - 14775823
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  14775892 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 14775823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 15153684 - 15153615
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||    
T  15153684 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatctgtgcaccaactttcattaag 15153615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 14556996 - 14556927
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||||    
T  14556996 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatctgtgcatcaactttcattaag 14556927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 13277287 - 13277219
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaa 86  Q
    |||||| |||||||||||||||||||| || |||||||||||||||||||||| ||||| |||||||||    
T  13277287 ctgtccgtatggaagcgacaaacgagtcacgagttgcaaagtatgaatatgtgcaccaattttcattaa 13277219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 13292665 - 13292597
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaa 86  Q
    |||||| |||||||||||||||||||| || |||||||||||||||||||||| ||||| |||||||||    
T  13292665 ctgtccgtatggaagcgacaaacgagtcacgagttgcaaagtatgaatatgtgcaccaattttcattaa 13292597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 14557044 - 14557124
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcga-ttcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||  ||||| || ||||||||| |||||||||    
T  14557044 taagaaaaactactatttatacaaatagtcctataactacctaatcatatctgttcgatttgaaaatcgaacctagccgtt 14557124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 15153732 - 15153791
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||  |||||||    
T  15153732 taagaaaaactactatttatacaaatagtcctataactacctaatcatatctgttcgatt 15153791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 13277335 - 13277415
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcga-ttcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||| ||| |||||||||| ||| |||| |||  ||||| || |||||||||||||||||||    
T  13277335 taagaaaaactactatttatacaaataatcctataactgcctgatcatatctgttcgatttgaaaatcgaaactagccgtt 13277415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 1658660 - 1658718
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||||| || |||||||| ||||||||||| |||||||||||||||||||||| ||||    
T  1658660 atggaagagagaaacgagtcacaagttgcaatgtatgaatatgtgtaccaacttacatt 1658718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 13292713 - 13292793
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcga-ttcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||| ||| |||||||||| ||| |||| |||  ||||| || |||| ||||||||||||||    
T  13292713 taagaaaaactactatttatacaaataatcctataactgcctgatcatatctgttcgatttgaaaagcgaaactagccgtt 13292793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 18567067 - 18567017
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| | |||||||||||||||||    
T  18567067 atggaagagagaaacgagtcacaagttgcaatgaatgaatatgtgtaccaa 18567017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 14022475 - 14022430
Alignment:
Q  39 acgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    |||||| ||||||||||| |||||||||||||||| ||||| ||||    
T  14022475 acgagtcacaagttgcaatgtatgaatatgtgtactaacttacatt 14022430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 84 - 343
Target Start/End: Original strand, 14683262 - 14683517
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattc-aaaatcgaaactagccgttcacaaactagccgtttgct 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14683262 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaaatcgaaactagccgttcacaaactagccgtttgct 14683361  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaact-aaaacaacttcttcgattcctgctgaggtagactt 281  Q
    ||||| |||||||||| | || ||     |||||| ||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||| ||||    
T  14683362 aaccgcttggtcttatccacaaga-----agagcgcgtcgacaacttcttttatccgtcgaactaaaaacaacttcttcaattcctgctgaagtacactt 14683456  T
Q  282 gtatttttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    ||||||||||||| ||| |||||| ||| ||| | |||| |||||||||||||  |||||||    
T  14683457 gtatttttcgatggatttctttcacaaagctacgcccca-tttttaggtcaaatgcttgact 14683517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 84 - 304
Target Start/End: Original strand, 7341575 - 7341798
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccg-ttcac-aaactagccgtttgc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  7341575 taagaaaaactactatttatacagatagtcctataactacctaattgcatcctttcgattcaaaatcgaaactagccgtttcacaaaactagccgtttgc 7341674  T
Q  182 taaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaacta-aaacaacttcttcgattcctgctgaggtagact 280  Q
    |||| | |||| ||||| ||   ||| |  |||||| ||||||||||||| | ||||||||||||| ||||||  | ||||||||||||||| ||| | |    
T  7341675 taactgcttggccttatccgtgagacctaaagagcgcgtcgacaacttctttcatccgtcgaactagaaacaatgtattcgattcctgctgaagtacatt 7341774  T
Q  281 tgtatttttcgatgtattcctttc 304  Q
    |||||||||||||| |||| ||||    
T  7341775 tgtatttttcgatggattcttttc 7341798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 84 - 304
Target Start/End: Original strand, 7396321 - 7396544
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccg-ttcac-aaactagccgtttgc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  7396321 taagaaaaactactatttatacagatagtcctataactacctaattgcatcctttcgattcaaaatcgaaactagccgtttcacaaaactagccgtttgc 7396420  T
Q  182 taaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaacta-aaacaacttcttcgattcctgctgaggtagact 280  Q
    |||| | |||| ||||| ||   ||| |  |||||| ||||||||||||| | ||||||||||||| ||||||  | ||||||||||||||| ||| | |    
T  7396421 taactgcttggccttatccgtgagacctaaagagcgcgtcgacaacttctttcatccgtcgaactagaaacaatgtattcgattcctgctgaagtacatt 7396520  T
Q  281 tgtatttttcgatgtattcctttc 304  Q
    |||||||||||||| |||| ||||    
T  7396521 tgtatttttcgatggattcttttc 7396544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 84 - 343
Target Start/End: Original strand, 13299578 - 13299835
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaactagccgtttgcta 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||   |||||||||||||||||    
T  13299578 taagaaaaactactatttatacagatagtcctataactacctaatcatatccgttcgattcaaaatcgaaactagccgtt-tgaaactagccgtttgcta 13299676  T
Q  184 accgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgct-gaggtagacttg 282  Q
    || | ||| |||||| |  |  |  || || |||  |||| ||||||  |||||| ||||||||||||  ||||||||||||| |||  ||||| || |     
T  13299677 actgcttgatcttatccaaaaaatctgaag-gcgcttcgataacttcctttatccatcgaactaaaacggcttcttcgattcccgctaaaggtatacata 13299775  T
Q  283 tatttttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    |||||||||||| ||| |||||| ||| ||| |||| | ||||||||||||||||||||||    
T  13299776 tatttttcgatggatt-ctttcacaaagctaagtccaactttttaggtcaaacccttgact 13299835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 84 - 342
Target Start/End: Original strand, 13310236 - 13310492
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaactagccgtttgcta 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||   |||||||||||||||||    
T  13310236 taagaaaaactactatttatacagatagtcctataactacctaatcatatccgttcgattcaaaatcgaaactagccgtt-tgaaactagccgtttgcta 13310334  T
Q  184 accgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgct-gaggtagacttg 282  Q
    || | ||| |||||| |  |  |  || || |||  |||| ||||||  |||||| ||||||||||||  ||||||||||||| |||  ||||| || |     
T  13310335 actgcttgatcttatccaaaaaatctgaag-gcgcttcgataacttcctttatccatcgaactaaaacggcttcttcgattcccgctaaaggtatacata 13310433  T
Q  283 tatttttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgac 342  Q
    |||||||||||| ||| |||||| ||| ||| |||| | |||||||||||||||||||||    
T  13310434 tatttttcgatggatt-ctttcacaaagctaagtccaactttttaggtcaaacccttgac 13310492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 88 - 343
Target Start/End: Complemental strand, 10792516 - 10792263
Alignment:
Q  88 aaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaactagccgtttgctaaccg 187  Q
    |||||||||||||||||||||||||||| |||||||||||||  || |||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  10792516 aaaaactactatttatacagatagtcctgtaactacctaatcctat-ctttcgattc-aaatcgaaactagccgttcgaaaactagccgtttgctaaccg 10792419  T
Q  188 tttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctgaggtagacttgtat-- 285  Q
     ||||   ||| |  |  |||||||  ||| ||||||||||||  |||  |||||||| |||||   |||||||||||||||||| ||||| || |||      
T  10792418 cttggctctat-ccaaaaacttggaaggcgcgtcgacaacttcctttactcgtcgaacaaaaacttattcttcgattcctgctgaagtagatttatatcc 10792320  T
Q  286 ttttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    ||||||||| ||||| | || ||| ||| | | |||||||| ||||||||||||||||    
T  10792319 ttttcgatgaattccatccacaaagctacgcctcatttttt-ggtcaaacccttgact 10792263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 88 - 343
Target Start/End: Complemental strand, 10778998 - 10778745
Alignment:
Q  88 aaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaactagccgtttgctaaccg 187  Q
    |||||||||||||||||||||||||||| |||||||||||||  || |||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  10778998 aaaaactactatttatacagatagtcctgtaactacctaatcctat-ctttcgattc-aaatcgaaactagccgttcgaaaactagccgtttgctaaccg 10778901  T
Q  188 tttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctgaggtagacttgtat-- 285  Q
     ||||   ||| |  |  |||||||  ||| ||||||||||||  |||  ||| |||| |||||   |||||||||||||||||| ||||| || |||      
T  10778900 cttggctctat-ccaaaaacttggaaggcgcgtcgacaacttcctttactcgttgaacaaaaacttattcttcgattcctgctgaagtagatttatatcc 10778802  T
Q  286 ttttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    ||||||||| ||||| | || ||| ||| | | |||||||| ||||||||||||||||    
T  10778801 ttttcgatgaattccatccacaaagctacgcctcatttttt-ggtcaaacccttgact 10778745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 88 - 343
Target Start/End: Complemental strand, 11887275 - 11887027
Alignment:
Q  88 aaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaactagccgtttgctaaccg 187  Q
    |||||||||||||||||||||||||||||||||||||||| || |||| ||| |||| ||||||| |||||||||||  |||||||||||||||||||||    
T  11887275 aaaaactactatttatacagatagtcctataactacctaaacatatcc-ttcaattc-aaatcgagactagccgttcgaaaactagccgtttgctaaccg 11887178  T
Q  188 tttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatcc-gtcgaactaaaacaacttcttcgattcctgctgaggtagacttgtatt 286  Q
     ||||  |||| |  |  |||||||  ||| |||||||||||| |||| || ||||||  |||||   |||||||||||||||||| ||||| ||||| |    
T  11887177 cttggctttat-ccaaaaacttggaaggcgcgtcgacaacttc-cttaacctgtcgaa--aaaacctattcttcgattcctgctgaagtagatttgta-t 11887083  T
Q  287 tttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    |||||||| ||||| | | |||| ||| | |||| | ||||||||||||||||||||    
T  11887082 tttcgatgaattccatccctaaagctacgcccca-tctttaggtcaaacccttgact 11887027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 7341527 - 7341458
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7341527 ctgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 7341458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 7396273 - 7396204
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7396273 ctgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 7396204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 11887327 - 11887396
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11887327 ctgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 11887396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 14683214 - 14683145
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14683214 ctgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 14683145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 10792569 - 10792637
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10792569 tgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 10792637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 10779050 - 10779119
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10779050 ctgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttccttaag 10779119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 10139829 - 10139898
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  10139829 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 10139898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 10171196 - 10171265
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  10171196 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 10171265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 13299530 - 13299461
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  13299530 ctgtccgtatggaagcgacaaatgagtcacaagttgcaaagtatgaatatgtgcaccaactttcattaag 13299461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 13310188 - 13310119
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  13310188 ctgtccgtatggaagcgacaaatgagtcacaagttgcaaagtatgaatatgtgcaccaactttcattaag 13310119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 10139781 - 10139701
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcga-ttcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||| |||  ||||| ||||||||||||||||||||||    
T  10139781 taagaaaaactactatttatacaaatagtcctataactacttaatcatatctgttcgatttcaaaatcgaaactagccgtt 10139701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 10171148 - 10171068
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcga-ttcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||| ||| |||||||||||||||| |||||| |||  ||||| ||||||||||||||||||||||    
T  10171148 taagaaaaactactatttacacaaatagtcctataactacttaatcatatctgttcgatttcaaaatcgaaactagccgtt 10171068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 12491986 - 12492047
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaacttt 80  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||||| ||||| |||||||||    
T  12491986 tgtccgtatggaagcgacaaacgagtcacaagttgcaatgtatgaacatgtgcaccaacttt 12492047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 12021534 - 12021475
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||| |||||||| ||||    
T  12021534 tatggaagcgacaaacaagtcacaagttgcaatgtatgaatatgtgcaccaacttacatt 12021475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 12844637 - 12844571
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    |||||| |||||||||||| ||||||||||||||||||| ||||||| ||||  |||||||| ||||    
T  12844637 ctgtccgtatggaagcgactaacgagttacaagttgcaatgtatgaaaatgtacaccaacttacatt 12844571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 13023942 - 13024007
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||| ||||||||| ||  |||||| ||||||||||| |||||||||||||||||||||| ||||    
T  13023942 tgtccgtatggaagccactgacgagtcacaagttgcaatgtatgaatatgtgtaccaacttacatt 13024007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 132511 - 132461
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| ||||||| |||||||||||    
T  132511 atggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaa 132461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 22445013 - 22445055
Alignment:
Q  42 agttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||    
T  22445013 agttacaagttgcaatgtatgaatttgtgtaccaacttacatt 22445055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 84 - 304
Target Start/End: Original strand, 14323821 - 14324043
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcac-aaactagccgtttgct 182  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14323821 taagaaaaactactatttatacagatagtcctgtaactacctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaaactagccgtttgct 14323920  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaacta-aaacaacttcttcgattcctgctgaggtagactt 281  Q
    ||| | |||||||||| |||| ||| || |||||| ||||||||||||| | ||||||||||||| ||||||| ||||||||||||||||| | | | ||    
T  14323921 aactgcttggtcttatccgcaagacctgaagagcgcgtcgacaacttctttcatccgtcgaactagaaacaacgtcttcgattcctgctgaagcacattt 14324020  T
Q  282 gtatttttcgatgtattcctttc 304  Q
    ||||||||| ||| ||| |||||    
T  14324021 gtatttttcaatggatttctttc 14324043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 84 - 304
Target Start/End: Original strand, 14346014 - 14346236
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcac-aaactagccgtttgct 182  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||    
T  14346014 taagaaaaactactatttatacagatagtcctgtaactacctaatcacatcctttcgattcaaaatcaaaactagccgttcacaaaactagctgtttgct 14346113  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaacta-aaacaacttcttcgattcctgctgaggtagactt 281  Q
    ||| | |||||||||| |||| ||| || |||||| ||||||||||||| | ||||||||||||| ||||||| ||||||||||||||||| | | | ||    
T  14346114 aactgcttggtcttatccgcaagacctgaagagcgcgtcgacaacttctttcatccgtcgaactagaaacaacgtcttcgattcctgctgaagcacattt 14346213  T
Q  282 gtatttttcgatgtattcctttc 304  Q
    ||||||||||||| ||| |||||    
T  14346214 gtatttttcgatggatttctttc 14346236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 84 - 304
Target Start/End: Original strand, 14035984 - 14036206
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcac-aaactagccgtttgct 182  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||    
T  14035984 taagaaaaactactatttatacagatagtcctgtaactacctaatcacatcctttcgattcaaaatcaaaactagccgttcacaaaactagctgtttgct 14036083  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaacta-aaacaacttcttcgattcctgctgaggtagactt 281  Q
    ||| | |||||||||| |||| ||| || | |||| ||||||||||||| | ||||||||||||| ||||||| |||| |||||||||||| | | | ||    
T  14036084 aactgcttggtcttatccgcaagacctgaatagcgcgtcgacaacttctttcatccgtcgaactagaaacaacgtctttgattcctgctgaagcacattt 14036183  T
Q  282 gtatttttcgatgtattcctttc 304  Q
    ||||||||||||| ||| |||||    
T  14036184 gtatttttcgatggatttctttc 14036206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 84 - 324
Target Start/End: Original strand, 18141907 - 18142145
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttca-caaactagccgtttgct 182  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||     
T  18141907 taagaaaaactactatttatacagatagccctataactacctaatcatatcctttcgattcaaaatcgaaactagccgttcataaaactagccgtttgca 18142006  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaact-aaaacaacttcttcgattcctgctgaggtagactt 281  Q
    ||||| |||||||||| | || ||| |   ||| | |||||  |||||| ||||||| |||||| |||||| ||||||||||||||||||| ||| ||||    
T  18142007 aaccgcttggtcttatccacaagacct---gagtgcgtcgatgacttcttttatccgacgaactaaaaacaccttcttcgattcctgctgaagtaaactt 18142103  T
Q  282 gtatttttcgatgtattcctttcataaacctatgtcccatttt 324  Q
    | ||||||||||| ||| |||||| ||| ||| | ||||||||    
T  18142104 gcatttttcgatggatt-ctttcacaaagctacgccccatttt 18142145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 84 - 276
Target Start/End: Original strand, 44277783 - 44277976
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattc-aaaatcgaaac-tagccgttcacaaactagccgtttgc 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||  |||||||||||||||    
T  44277783 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaaatcgaaacttagccgttcgaaaactagccgtttgc 44277882  T
Q  182 taaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctgaggta 276  Q
    |||||| ||||||||||   |  |||||| || ||| ||| ||| ||||| | |||||||||||||||||| ||||||||||||| |||||||||    
T  44277883 taaccgcttggtcttatctaccagacttgaag-gcgcgtctacagcttctttcatccgtcgaactaaaacagcttcttcgattcccgctgaggta 44277976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 84 - 324
Target Start/End: Original strand, 18115339 - 18115577
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttca-caaactagccgtttgct 182  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | ||||  ||||||| ||||||||    
T  18115339 taagaaaaactactatttatacagatagccctataactacctaatcatatcctttcgattcaaaatcgaaactagtccttcataaaactagtcgtttgct 18115438  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaact-aaaacaacttcttcgattcctgctgaggtagactt 281  Q
    ||||| |||||||||| | || ||  |   ||||| |||||  |||||| ||||||| |||||| |||||| ||||||||||||||||||| ||| ||||    
T  18115439 aaccgcttggtcttatccacaagatct---gagcgcgtcgatgacttcttttatccgacgaactaaaaacaccttcttcgattcctgctgaagtaaactt 18115535  T
Q  282 gtatttttcgatgtattcctttcataaacctatgtcccatttt 324  Q
    | ||||||||||| ||| |||||| ||| ||| | ||||||||    
T  18115536 gcatttttcgatggatt-ctttcacaaagctacgccccatttt 18115577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 14323773 - 14323704
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14323773 ctgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 14323704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 18141860 - 18141791
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18141860 ctgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 18141791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 14035936 - 14035867
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14035936 ctgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaaatttcattaag 14035867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 14345966 - 14345897
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14345966 ctgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaattttcattaag 14345897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 18115292 - 18115223
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18115292 ctgtccgtatggaagtgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 18115223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 18160160 - 18160091
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18160160 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaag 18160091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 44277735 - 44277666
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44277735 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaag 44277666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 18174978 - 18175057
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||  ||||||  |||||||||||||||||||    
T  18174978 taagaaaaactactatttatacagataatcctataactacctaatcatatctattcgatcaaaaatcgaaactagccgtt 18175057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 15758628 - 15758696
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  15758628 tgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaacatgtgtaccaaatttcattaag 15758696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 18174917 - 18174861
Alignment:
Q  31 agcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18174917 agcgacaaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaag 18174861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 1978286 - 1978218
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||    
T  1978286 tgtccgtatgaaagcgacaaacgagtcacaagttgcaaagtatgaacatgtgtaccaaatttcgttaag 1978218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 15758579 - 15758528
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcc 135  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||| ||||    
T  15758579 taagaaaaactactatttatacagatagacatataactacctagtcatatcc 15758528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 1978335 - 1978381
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatca 130  Q
    ||||||||||||||||||||||| |||| | ||||||||||||||||    
T  1978335 taagaaaaactactatttatacaaatagacttataactacctaatca 1978381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 10864182 - 10864237
Alignment:
Q  21 tccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    |||| ||||||| || |||||||| ||||||||||| |||||||| ||||||||||    
T  10864182 tccacatggaagagagaaacgagtcacaagttgcaatgtatgaatctgtgtaccaa 10864237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 18752723 - 18752782
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||||| ||| ||| |||| ||||||||||| |||||||| ||||||||||||| ||||    
T  18752723 tatggaatcgagaaatgagtcacaagttgcaatgtatgaatctgtgtaccaacttacatt 18752782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 10827856 - 10827806
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| |||||||| ||||||||||    
T  10827856 atggaagagagaaacgagtcacaagttgcaatgtatgaatctgtgtaccaa 10827806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 11021648 - 11021598
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| |||||||| ||||||||||    
T  11021648 atggaagagagaaacgagtcacaagttgcaatgtatgaatctgtgtaccaa 11021598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 40342913 - 40342863
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| ||||||| |||||||||||    
T  40342913 atggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaa 40342863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 11989457 - 11989405
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaac 77  Q
    |||||||||||||||||||| | ||||||||| |||||||  |||| ||||||    
T  11989457 tatggaagcgacaaacgagtcataagttgcaatgtatgaacgtgtgcaccaac 11989405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 84 - 343
Target Start/End: Original strand, 16668071 - 16668331
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcac-aaactagccgtttgct 182  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16668071 taagaaaaactactatttatacagatagtcctattactacctaatcacatcgtttcgattcaaaatcgaaactagccgttcacaaaactagccgtttgct 16668170  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaacta-aaacaacttcttcgattcctgctgaggtagactt 281  Q
    ||| | |||||||||| |||| ||| || | |||| ||||||||||||| | ||||||||||||| ||||||| | ||||||||||||||| | | | ||    
T  16668171 aactgcttggtcttatccgcaagacctgaatagcgcgtcgacaacttctttcatccgtcgaactagaaacaacgttttcgattcctgctgaagcacattt 16668270  T
Q  282 gtatttttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    ||||||||||||| ||| |||||  ||| ||  | |||| | ||||||||||||||||||||    
T  16668271 gtatttttcgatggatttctttctcaaagcttcgcccca-tctttaggtcaaacccttgact 16668331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 84 - 294
Target Start/End: Original strand, 17426213 - 17426423
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattc-aaaatcgaaactagccgttcacaaactagccgtttgct 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||  ||||||||||||||||    
T  17426213 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaaatcgaatctagccgttcgaaaactagccgtttgct 17426312  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctgaggtagacttg 282  Q
    ||||| |||||||||| | || ||| || || ||| ||| ||| ||||| | |||||||||||||||||| ||||||||||||||||||||||| || ||    
T  17426313 aaccgcttggtcttatccacaagacctgaag-gcgcgtctacagcttctttcatccgtcgaactaaaacagcttcttcgattcctgctgaggtacacatg 17426411  T
Q  283 tatttttcgatg 294  Q
    ||||| ||||||    
T  17426412 tatttgtcgatg 17426423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 84 - 276
Target Start/End: Original strand, 20193271 - 20193464
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattc-aaaatcgaaac-tagccgttcacaaactagccgtttgc 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||  |||||||||||||||    
T  20193271 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaaatcgaaacttagccgttcgaaaactagccgtttgc 20193370  T
Q  182 taaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctgaggta 276  Q
    |||||| ||||||||||   |  |||||| || ||| ||| ||| ||||| | |||||||||||||||||| ||||||||||||| |||||||||    
T  20193371 taaccgcttggtcttatctaccagacttgaag-gcgcgtctacagcttctttcatccgtcgaactaaaacagcttcttcgattcccgctgaggta 20193464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 343
Target Start/End: Complemental strand, 1735315 - 1735067
Alignment:
Q  92 actactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaactagccgtttgctaaccgtttg 191  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||  ||||||||||||||||||||| |||    
T  1735315 actactatttatacagatagtcctataactacctaatcatatcc-ttcgattcaaaatcgagactagccgttc-gaaactagccgtttgctaaccgcttg 1735218  T
Q  192 gtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctgaggtagacttgtatttttcg 291  Q
    | ||||| |  |  |||||||  ||| ||||||||||||  |||   ||||||| |||||    |||||||||||| |||| ||||| ||||||||||||    
T  1735217 gccttatccaaaaaacttggaaggcgcgtcgacaacttcctttacttgtcgaacaaaaacccactcttcgattccttctgaagtagatttgtatttttcg 1735118  T
Q  292 atgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    ||| ||||  | || ||| ||| |  ||||||||| ||||||||||||||||    
T  1735117 atggattctgtccacaaagctacgctccatttttt-ggtcaaacccttgact 1735067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 16668023 - 16667954
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16668023 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaacttttattaag 16667954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 17426165 - 17426096
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17426165 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaag 17426096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 20193223 - 20193154
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20193223 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaag 20193154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 22352082 - 22352013
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||  ||||| ||||||||||    
T  22352082 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtccaccaattttcattaag 22352013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 25389051 - 25388983
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaa 86  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||    
T  25389051 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaacatgtgcaccaattttcattaa 25388983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 12821291 - 12821224
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatta 85  Q
    |||||| |||||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||    
T  12821291 ctgtccgtatggaagcgacaaacgagtcataagttgcaaagtatgaatatgtgcaccaattttcatta 12821224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 22352130 - 22352189
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| | || |||||||    
T  22352130 taagaaaaactactatttatacaaatagtcctataactacctaatcatagccattcgatt 22352189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 12821339 - 12821398
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||| ||||||||||| |||| |||||||||||||| |||||||| |||||||    
T  12821339 taagaaaaactgctatttatacaaatagacctataactacctagtcacatccattcgatt 12821398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 29708229 - 29708170
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||||| |||||||| ||||    
T  29708229 tatggaagcgactaacgagtcacaagttgcaatgtatgaatatgtgcaccaacttacatt 29708170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 22064656 - 22064717
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaacttt 80  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||  |||| |||||||||    
T  22064656 tgtccgtatggaagcgacaaacgagtcacaagttgcaatgtatgaacgtgtgcaccaacttt 22064717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 25389099 - 25389141
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactaccta 126  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  25389099 taagaaaaactactatttatacaaatagacctataactaccta 25389141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 41438907 - 41438853
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactt 79  Q
    |||||||||||  ||||||| ||||||||||| |||||||||||| |||||||||    
T  41438907 tatggaagcgatgaacgagtcacaagttgcaatgtatgaatatgtataccaactt 41438853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 27818260 - 27818315
Alignment:
Q  21 tccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    |||||||| ||| || |||||||| ||||||||||| ||||||| |||||||||||    
T  27818260 tccatatgcaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaa 27818315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 22698160 - 22698110
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| ||||||| |||||||||||    
T  22698160 atggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaa 22698110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 84 - 343
Target Start/End: Complemental strand, 5648 - 5391
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattc-aaaatcgaaactagccgttcacaaactagccgtttgct 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||  |||||||| |||||||    
T  5648 taagaaaaactactatttatacagatagtcctataactacctaatcccatcctttcgattcaaaaatcgaaactagccgttcgaaaactagctgtttgct 5549  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctgaggtagacttg 282  Q
    ||||| |||||||||| | || ||| || || ||| ||||||||||||| | |||||||||||||||||| |||||||||||||| |||||||| || ||    
T  5548 aaccgcttggtcttatccacaagacatgaag-gcgcgtcgacaacttctttcatccgtcgaactaaaacagcttcttcgattcctactgaggtacacatg 5450  T
Q  283 tatttttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    ||||| |||||| ||| | |||| ||| ||| | |||| ||||| ||||||||||||||||    
T  5449 tatttgtcgatggatttc-ttcacaaagctacgcccca-tttttgggtcaaacccttgact 5391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 5696 - 5765
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  5696 ctgtccgtatggaagcgacaaacgagtcacaagttgtaaagtatgaatatgtgtaccaactttcattaag 5765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 84 - 294
Target Start/End: Complemental strand, 24954360 - 24954148
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcac-aaactagccgtttgct 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24954360 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaaactagccgtttgct 24954261  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaacta-aaacaacttcttcgattcctgctgaggtagactt 281  Q
    ||| | |||| |||||||| | ||| |  |||||| ||||||||||||| | ||||||||||||| ||||||| | ||||||||||||||| | | | ||    
T  24954260 aactgcttggccttatacgtaagacctaaagagcgcgtcgacaacttctttcatccgtcgaactagaaacaacgtattcgattcctgctgaagcacattt 24954161  T
Q  282 gtatttttcgatg 294  Q
    |||||||||||||    
T  24954160 gtatttttcgatg 24954148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 84 - 292
Target Start/End: Complemental strand, 24967549 - 24967339
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcac-aaactagccgtttgct 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24967549 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaaactagccgtttgct 24967450  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaacta-aaacaacttcttcgattcctgctgaggtagactt 281  Q
    ||| | |||| |||||||| | ||| |  |||||| ||||||||||||| | ||||||||||||| ||||||| | ||||||||||||||| | | | ||    
T  24967449 aactgcttggccttatacgtaagacctaaagagcgcgtcgacaacttctttcatccgtcgaactagaaacaacgtattcgattcctgctgaagcacattt 24967350  T
Q  282 gtatttttcga 292  Q
    |||||||||||    
T  24967349 gtatttttcga 24967339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 23190368 - 23190447
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||||||    
T  23190368 taagaaaaactactatttatacagataatcctataactacctaatcatatctattcgattcaaaatcgaaactagccgtt 23190447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 23203984 - 23204063
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||||||    
T  23203984 taagaaaaactactatttatacagataatcctataactacctaatcatatctattcgattcaaaatcgaaactagccgtt 23204063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 23611623 - 23611702
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||||||    
T  23611623 taagaaaaactactatttatacagataatcctataactacctaatcatatctattcgattcaaaatcgaaactagccgtt 23611702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 22633843 - 22633765
Alignment:
Q  85 aagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||||||    
T  22633843 aagaaaaactactatttatacagataatcctataactacctaatcatatctattcgattcaaaatcgaaactagccgtt 22633765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 22648641 - 22648710
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22648641 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaag 22648710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 22648593 - 22648514
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||| |||  |||||||||||||||||||||||||||    
T  22648593 taagaaaaactactatttatacagataatcctagaactacctaatcatatctattcgattcaaaatcgaaactagccgtt 22648514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 23190320 - 23190251
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  23190320 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgtacaaactttcattaag 23190251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 23203936 - 23203867
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  23203936 ctgtccgtatggaagcgacaaatgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaag 23203867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 23611575 - 23611506
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  23611575 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgtacaaactttcattaag 23611506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 23615173 - 23615112
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaa 86  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  23615173 tatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgtaccaaccttcattaa 23615112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 23615228 - 23615307
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    |||||||||||||||||||||||| || |||||||||||||||| || |||  ||||||||||||||| |||||||||||    
T  23615228 taagaaaaactactatttatacaggtaatcctataactacctaaacatatctgttcgattcaaaatcggaactagccgtt 23615307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 24896708 - 24896770
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||| ||||| ||||||||||    
T  24896708 tatggaagcgacaaactagtcacaagttgcaaagtatgaacatgtgcaccaattttcattaag 24896770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 22633892 - 22633939
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaat 65  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  22633892 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaat 22633939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 22881018 - 22881069
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    |||| |||||| |||||||| ||||||||||| |||||||||||||||||||    
T  22881018 tatgaaagcgataaacgagtcacaagttgcaatgtatgaatatgtgtaccaa 22881069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 31817989 - 31818048
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||||||||| |||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  31817989 tatggaagcgataaacgagtcacaagttgcaatatatgaatatgagtaccaacttacatt 31818048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 39227519 - 39227457
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaacttt 80  Q
    |||||| ||||||| |||||||||| | ||||||||||| ||||||| ||||| |||||||||    
T  39227519 ctgtccgtatggaatcgacaaacgaatcacaagttgcaatgtatgaacatgtgcaccaacttt 39227457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 16664742 - 16664690
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaac 77  Q
    ||||||||||| |||||||| ||||||||||| |||||||| | |||||||||    
T  16664742 tatggaagcgataaacgagtcacaagttgcaatgtatgaatctatgtaccaac 16664690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 22593816 - 22593866
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| ||||||| |||||||||||    
T  22593816 atggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaa 22593866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 23803423 - 23803373
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| ||||||| |||||||||||    
T  23803423 atggaagagagaaacgagtaacaagttgcaatgtatgaacatgtgtaccaa 23803373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 23815053 - 23815003
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| ||||||| |||||||||||    
T  23815053 atggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaa 23815003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 23829901 - 23829851
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| ||||||| |||||||||||    
T  23829901 atggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaa 23829851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 24896653 - 24896611
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactaccta 126  Q
    ||||||||||||||||||||||| |||| | ||||||||||||    
T  24896653 taagaaaaactactatttatacaaatagacttataactaccta 24896611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 37130477 - 37130527
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| ||||||| |||||||||||    
T  37130477 atggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaa 37130527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 22648460 - 22648428
Alignment:
Q  240 tcgaactaaaacaacttcttcgattcctgctga 272  Q
    |||||||||||| ||||||||||||||||||||    
T  22648460 tcgaactaaaacgacttcttcgattcctgctga 22648428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 24963768 - 24963800
Alignment:
Q  55 aaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||||||| ||||||||||||||||||||||    
T  24963768 aaagtatgaacatgtgtaccaactttcattaag 24963800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 121; Significance: 6e-62; HSPs: 4)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 84 - 343
Target Start/End: Original strand, 46383 - 46640
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattc-aaaatcgaaactagccgttcacaaactagccgtttgct 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||||    
T  46383 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaaatcaaaactagccgttcgaaaactagccgtttgct 46482  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctgaggtagacttg 282  Q
    ||||  |||||||||| | || ||| || || ||| ||| ||| ||||| | |||||||||||||||||| ||||||||||||||||||||||| || ||    
T  46483 aaccacttggtcttatccacaagacctgaag-gcgcgtctacagcttctttcatccgtcgaactaaaacagcttcttcgattcctgctgaggtacacatg 46581  T
Q  283 tatttttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    ||||| |||||| ||| | |||| ||| ||| | |||  ||||| ||||||||||||||||    
T  46582 tatttgtcgatggatttc-ttcacaaagctacg-ccctatttttgggtcaaacccttgact 46640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 84 - 343
Target Start/End: Original strand, 51021 - 51278
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattc-aaaatcgaaactagccgttcacaaactagccgtttgct 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||||||||||    
T  51021 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaaatcaaaactagccgttcgaaaactagccgtttgct 51120  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctgaggtagacttg 282  Q
    ||||  |||||||||| | || ||| || || ||| ||| ||| ||||| | |||||||||||||||||| ||||||||||||||||||||||| || ||    
T  51121 aaccacttggtcttatccacaagacctgaag-gcgcgtctacagcttctttcatccgtcgaactaaaacagcttcttcgattcctgctgaggtacacatg 51219  T
Q  283 tatttttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    ||||| |||||| ||| | |||| ||| ||| | |||  ||||| ||||||||||||||||    
T  51220 tatttgtcgatggatttc-ttcacaaagctacg-ccctatttttgggtcaaacccttgact 51278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 50973 - 50904
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50973 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaag 50904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 46335 - 46266
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  46335 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgtatatgtgtaccaactttcattaag 46266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 84 - 343
Target Start/End: Complemental strand, 22086419 - 22086162
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattc-aaaatcgaaactagccgttcacaaactagccgtttgct 182  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||    
T  22086419 taagaaaaactactatttatacggatagtcctataactacctaatcacatcctttcgattcaaaaatcgaaactagccgttcgagaactagccgtttgct 22086320  T
Q  183 aaccgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctgaggtagacttg 282  Q
    ||||| |||||||||| | || ||| || || ||  ||| ||| ||||| | |||||||||||||||||| |||||||||||||| |||||||| || ||    
T  22086319 aaccgcttggtcttatccacaagacctgaag-gctcgtctacagcttctttcatccgtcgaactaaaacagcttcttcgattcctactgaggtacacatg 22086221  T
Q  283 tatttttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    ||||| |||||| ||| | |||| ||| ||| | |||  ||||| ||||||||||||||||    
T  22086220 tatttgtcgatggatttc-ttcacaaagctacg-ccctatttttgggtcaaacccttgact 22086162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 88 - 343
Target Start/End: Original strand, 41383687 - 41383939
Alignment:
Q  88 aaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaactagccgtttgctaaccg 187  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  41383687 aaaaactattatttatacagatagtcctataactacctaatcatatcc-ttcgattcaaaatcgagactagccgttca-aaactagccgtttgctaaccg 41383784  T
Q  188 tttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctgaggtagacttgtattt 287  Q
    ||||| ||||| |  |  |||||||  ||| ||||||||||||  ||| | ||||||| |||||    ||||||||||||||||| ||||| ||||||||    
T  41383785 tttggccttatccaaaaaacttggaaggcgcgtcgacaacttcctttacctgtcgaacaaaaacctactcttcgattcctgctgaagtagatttgtattt 41383884  T
Q  288 ttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    ||||||| |||| || || ||| ||| | |||| ||||||||||||||||||||||    
T  41383885 ttcgatggattctttccacaaagctacgcccca-tttttaggtcaaacccttgact 41383939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 88 - 343
Target Start/End: Original strand, 41368780 - 41369032
Alignment:
Q  88 aaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaactagccgtttgctaaccg 187  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||  |||||||||||||||||||||    
T  41368780 aaaaactattatttatacagatagtcctataactacctaatcatatcc-ttcgattcaaaatcgagactagccgttc-gaaactagccgtttgctaaccg 41368877  T
Q  188 tttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctgaggtagacttgtattt 287  Q
    ||||| ||||| |  |  |||||||  ||| ||||||||||||  ||| | ||||||| |||||    |||||||||| |||||| ||||| ||||||||    
T  41368878 tttggccttatccaaaaaacttggaaggcgcgtcgacaacttcctttacctgtcgaacaaaaacctactcttcgattcatgctgaagtagatttgtattt 41368977  T
Q  288 ttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    ||||||| |||| || || ||| ||| | |||| ||||||||||||||||||||||    
T  41368978 ttcgatggattctttccacaaagctacgcccca-tttttaggtcaaacccttgact 41369032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 41383636 - 41383567
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  41383636 ctgtccatatggaagcgacaaacgagttacaagtcgcaaagtatgaatatgtgtaccaattttcattaag 41383567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 41368728 - 41368660
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41368728 tgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaattttcattaag 41368660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 22086467 - 22086536
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  22086467 ctgtccgtatggaagcgacaaacgagtcacaagttgaaaagtatgaatatgtgtaccaactttcattaag 22086536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 31845726 - 31845658
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaa 86  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  31845726 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaa 31845658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 22794524 - 22794462
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  22794524 tatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 22794462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 1528717 - 1528648
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  1528717 ctgtccgtatggaaacgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 1528648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 22809131 - 22809062
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| ||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  22809131 ctgtccgtatggaagcaacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 22809062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 27561966 - 27562035
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| |||||||| |||||||||||||||| ||||| ||||||||||    
T  27561966 ctgtccgtatggaagcgacaaacgagtcacaagttgtaaagtatgaatatgtgcaccaattttcattaag 27562035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 29305286 - 29305355
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||    
T  29305286 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaacatgtgcaccaattttcattaag 29305355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 22684706 - 22684640
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||||  ||||||||||||||||||    
T  22684706 ctgtccgtatggaagcgacaaatgagtcacaagttgcaaagtatgaacctgtgtaccaactttcatt 22684640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 21137729 - 21137788
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| ||||    
T  21137729 tatggaagcgataaacgagtcacaagttgcaatgtatgaatatgtgtaccaacttacatt 21137788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 23511684 - 23511743
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| ||||    
T  23511684 tatggaagcgataaacgagtcacaagttgcaatgtatgaatatgtgtaccaacttacatt 23511743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 4229918 - 4229860
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||||| || |||||||| ||||||||||| |||||||||||||||||||||| ||||    
T  4229918 atggaagagataaacgagtcacaagttgcaatgtatgaatatgtgtaccaacttacatt 4229860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 21310797 - 21310859
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaacttt 80  Q
    |||||| |||||||||||||||||||| | ||||||||| ||||||| ||||| |||||||||    
T  21310797 ctgtccgtatggaagcgacaaacgagtcagaagttgcaatgtatgaacatgtgcaccaacttt 21310859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 21076634 - 21076693
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||||||||||  |||||| | ||||||||| |||||||||||||||||||||| ||||    
T  21076634 tatggaagcgactgacgagtcataagttgcaatgtatgaatatgtgtaccaacttacatt 21076693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 31845774 - 31845833
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||||||||||||||| |||| |||||||||||||| ||| | || |||||||    
T  31845774 taagaaaaactactatttatacaaatagacctataactacctagtcatagccattcgatt 31845833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 27561919 - 27561838
Alignment:
Q  83 ttaagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcga-ttcaaaatcgaaactagccgtt 163  Q
    |||||||||||| ||||||||||| ||| |||||||||| |||||||| | |  ||||| || ||||| |||||||||||||    
T  27561919 ttaagaaaaacttctatttatacaaataatcctataactgcctaatcataactattcgatttaaaaattgaaactagccgtt 27561838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 21168404 - 21168358
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgta 72  Q
    ||||||| || |||||||| ||||||||||| |||||||||||||||    
T  21168404 atggaagagagaaacgagtcacaagttgcaatgtatgaatatgtgta 21168358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 15442 - 15553
Alignment:
Q  88 aaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcac-aaactagccgtttgctaacc 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  15442 aaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaaactagccgtttgctaact 15541  T
Q  187 gtttggtcttat 198  Q
    | |||| |||||    
T  15542 gcttggccttat 15553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 15390 - 15321
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  15390 ctgtccgtatggaagcgacaaacgagttacaagttgcaaagtattaatatgtttaccaactttcattaag 15321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 84 - 343
Target Start/End: Original strand, 28644 - 28885
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgttcacaaactagccgtttgcta 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||               ||||||||| |||||||    
T  28644 taagaaaaactactatttatacagatagtcctataactacctaatcgcatcctttcgattcaaaatcg---------------aaactagccatttgcta 28728  T
Q  184 accgtttggtcttatacgcaggacttggagagcgtgtcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctgaggtagacttgt 283  Q
    |||| |||||||||| | || ||| || || ||| ||||||||||||| | ||| |||||||||||| | ||||||||||||||||||||||| || |||    
T  28729 accgcttggtcttattcacaagacctgaag-gcgcgtcgacaacttctttcatctgtcgaactaaaatagcttcttcgattcctgctgaggtacacatgt 28827  T
Q  284 atttttcgatgtattcctttcataaacctatgtcccattttttaggtcaaacccttgact 343  Q
    |||| |||||| ||| | |||| ||| |||   |||| ||||||||||||||||||||||    
T  28828 atttgtcgatggatttc-ttcacaaagctaaacccca-tttttaggtcaaacccttgact 28885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 39875 - 39796
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||  || ||||||||||||||||||||||||    
T  39875 taagaaaaactactatttatacagataatcctataactacctaatcatatctgtttgattcaaaatcgaaactagccgtt 39796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 28589 - 28527
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28589 tatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaag 28527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 39923 - 39992
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  39923 ctgtccgtatggaagcgacaaacgagtcacaagttgcgaagtatgaatatgtgtaccaactttcattaag 39992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 29401 - 29339
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||| ||||| ||||||||||    
T  29401 tatgaaagcgacaaacgagtcacaagttgaaaagtatgaatatgtgcaccaattttcattaag 29339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 29456 - 29515
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||||||||||||||| |||| |||||||||||||| ||| | || |||||||    
T  29456 taagaaaaactactatttatacaaatagacctataactacctagtcatagccattcgatt 29515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 39755 - 39703
Alignment:
Q  220 tcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctga 272  Q
    |||| ||||||  |||||| ||||||||||||  |||||||||||||||||||    
T  39755 tcgataacttcctttatccatcgaactaaaacggcttcttcgattcctgctga 39703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 16310168 - 16310099
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16310168 ctgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 16310099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 23431985 - 23432047
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23431985 tatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaag 23432047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 16209861 - 16209930
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  16209861 ctgtccatatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 16209930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 23431930 - 23431851
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||| |||  || ||||||||||||||||||||||||    
T  23431930 taagaaaaactactatttatacaaataatcctataactacctaatcatatctattagattcaaaatcgaaactagccgtt 23431851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 23491025 - 23491087
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  23491025 tatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgtaccaactctcattaag 23491087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 23496623 - 23496685
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  23496623 tatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgtaccaactctcattaag 23496685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 19025455 - 19025386
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  19025455 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 19025386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 19405851 - 19405782
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  19405851 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaacatgtgcaccaactttcattaag 19405782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 1557747 - 1557679
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  1557747 tgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaacatgtgtaccaaatttcattaag 1557679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 19038497 - 19038429
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  19038497 tgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 19038429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 30755593 - 30755525
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  30755593 tgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 30755525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 23490970 - 23490893
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||| |||  ||||||||  |||||||||||||||||    
T  23490970 taagaaaaactactatttatacaaataatcctataactacctaatcatatctattcgattc--aatcgaaactagccgtt 23490893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 23496568 - 23496491
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||| |||  ||||||||  |||||||||||||||||    
T  23496568 taagaaaaactactatttatacaaataatcctataactacctaatcatatctattcgattc--aatcgaaactagccgtt 23496491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 16209813 - 16209754
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| | || |||||||    
T  16209813 taagaaaaactactatttatacaaatagacctataactacctaatcatagccattcgatt 16209754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 1557796 - 1557847
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcc 135  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||| ||||    
T  1557796 taagaaaaactactatttatacagatagacatataactacctagtcatatcc 1557847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 30755642 - 30755688
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatca 130  Q
    ||||||||||||||||||||||| |||| | ||||||||||||||||    
T  30755642 taagaaaaactactatttatacaaatagacttataactacctaatca 30755688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 19025502 - 19025583
Alignment:
Q  83 ttaagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcga-ttcaaaatcgaaactagccgtt 163  Q
    |||||||||||| ||||||||||| ||| | |||||||| |||||||| | |  ||||| || |||||||||||||||||||    
T  19025502 ttaagaaaaacttctatttatacaaataattctataactgcctaatcataactattcgatttgaaaatcgaaactagccgtt 19025583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 19038545 - 19038626
Alignment:
Q  83 ttaagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcga-ttcaaaatcgaaactagccgtt 163  Q
    |||||||||||| ||||||||||| ||| | |||||||| |||||||| | |  ||||| || |||||||||||||||||||    
T  19038545 ttaagaaaaacttctatttatacaaataattctataactgcctaatcataactattcgatttgaaaatcgaaactagccgtt 19038626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 26460647 - 26460597
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| ||||||| |||||||||||    
T  26460647 atggaagagataaacgagtcacaagttgcaatgtatgaacatgtgtaccaa 26460597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 43234 - 43313
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||  |||||||||||||||||||||||||||    
T  43234 taagaaaaactactatttatacagataatcctataactacctaatcatatctattcgattcaaaatcgaaactagccgtt 43313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 43186 - 43117
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| | |||||||||||||||||| |||| ||||| ||||||||||    
T  43186 ctgtccgtatggaagcgacaaacgagtcataagttgcaaagtatgaatctgtgcaccaattttcattaag 43117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 43354 - 43406
Alignment:
Q  220 tcgacaacttctcttatccgtcgaactaaaacaacttcttcgattcctgctga 272  Q
    |||| ||||||  ||| || ||||||| |||||||||||||||||||||||||    
T  43354 tcgataacttcctttacccatcgaactgaaacaacttcttcgattcctgctga 43406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 20506384 - 20506315
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20506384 ctgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgcaccaactttcattaag 20506315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 21530379 - 21530441
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  21530379 tatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 21530441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 21982678 - 21982609
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||    
T  21982678 ctgtccgtatggaagcgacaaacgagtcacaagttgcagagtatgaatatgtgcaccaattttcattaag 21982609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 26274162 - 26274093
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  26274162 ctgtccgtatggaagtgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 26274093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 21504705 - 21504758
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgt 71  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  21504705 ctgtccgtatggaagcgacaaacgagtaacaagttgcaaagtatgaatatgtgt 21504758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 21507876 - 21507931
Alignment:
Q  32 gcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  21507876 gcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 21507931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 20506432 - 20506491
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| | || |||||||    
T  20506432 taagaaaaactactatttatacaaatagacctataactacctaatcatagccattcgatt 20506491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 21982726 - 21982785
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||| | || |||||||    
T  21982726 taagaaaaactactatttatataaatagtcctataactacctaatcatagccattcgatt 21982785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 20024512 - 20024462
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| |||||||||||||||||||    
T  20024512 atggaagagagaaacgagtcacaagttgcaatgtatgaatatgtgtaccaa 20024462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 40932954 - 40933004
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| |||||||||||||||||||    
T  40932954 atggaagagataaacgagtcacaagttgcaatgtatgaatatgtgtaccaa 40933004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 21504657 - 21504598
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||| ||||||||||| |||| ||||||||| |||||||| | || |||||||    
T  21504657 taagaaaaacttctatttatacaaatagacctataactgcctaatcatagccattcgatt 21504598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 21530324 - 21530265
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||| ||||||||||| |||| ||||||||| |||||||| | || |||||||    
T  21530324 taagaaaaacttctatttatacaaatagacctataactgcctaatcatagccattcgatt 21530265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 26274210 - 26274269
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||| ||||||||||| |||| ||||||||| |||||||| | || |||||||    
T  26274210 taagaaaaacttctatttatacaaatagacctataactgcctaatcatagccattcgatt 26274269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 18156219 - 18156269
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| |||||||| ||||||||||    
T  18156219 atggaagagagaaacgagtcacaagttgcaatgtatgaatctgtgtaccaa 18156269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 4532 - 4452
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaa-atcgaaactagccgtt 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| ||||||||||||||||    
T  4532 taagaaaaactactatttatacagatagtcctataactacctaatcgtatccgttcgattcaaatatcgaaactagccgtt 4452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 4587 - 4649
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4587 tatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaag 4649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 23043 - 22964
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||| |||  |||||||||||||||||||||||||||    
T  23043 taagaaaaactactatttatacaaataatcctataactacctaatcatatctattcgattcaaaatcgaaactagccgtt 22964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 44219 - 44140
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||  ||| |||||||||||||||||| ||||    
T  44219 taagaaaaactactatttatacagataatcctataactacctaatcatatctattcaattcaaaatcgaaactagtcgtt 44140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 23091 - 23160
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  23091 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 23160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 44268 - 44336
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||| |||| ||||| ||||||||||    
T  44268 tgtccgtatgaaagcgacaaacgagtcacaagttgcaaagtatgaatctgtgcaccaattttcattaag 44336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 343
Target Start/End: Complemental strand, 22903 - 22796
Alignment:
Q  240 tcgaactaaaacaacttcttcgattcctgctg-aggtagacttgtat---ttttcgatgtattcctttcataaacctatgtcccattttttaggtcaaac 335  Q
    ||||||| |||||||||||||||||||||||| ||| | |  | |||   ||||||||| ||| | |||| ||| ||| |||||| ||||| ||||||||    
T  22903 tcgaactgaaacaacttcttcgattcctgctgaaggcatatatatatatattttcgatggatttccttcacaaatctaagtcccactttttgggtcaaac 22804  T
Q  336 ccttgact 343  Q
    ||||||||    
T  22803 ccttgact 22796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 2496 - 2565
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  2496 ctgtccgtatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgcaccaattttcattaag 2565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 2449 - 2368
Alignment:
Q  83 ttaagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcga-ttcaaaatcgaaactagccgtt 163  Q
    |||||||||||| ||||||||||| ||| ||||||||||||||||||| | |  || || || |||||||||||||||||||    
T  2449 ttaagaaaaacttctatttatacaaataatcctataactacctaatcataactatttgatttgaaaatcgaaactagccgtt 2368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 41399 - 41468
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  41399 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaactttcattaag 41468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 41351 - 41272
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||  | |  ||||||| |||||||||||||||||||    
T  41351 taagaaaaactactatttatacaaatagtcctataactacctaatcgtacctgttcgatttaaaatcgaaactagccgtt 41272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 142284 - 142215
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  142284 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaactttcattaag 142215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 118434 - 118365
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  118434 ctgtccgtatggaatcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaactttcattaag 118365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 118482 - 118541
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||||||||||||||| |||| |||||||||||||| ||| | || |||||||    
T  118482 taagaaaaactactatttatacaaatagacctataactacctagtcatagccattcgatt 118541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 142332 - 142391
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||||||||||||||| |||| |||||||||||||| ||| | || |||||||    
T  142332 taagaaaaactactatttatacaaatagacctataactacctagtcatagccattcgatt 142391  T

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Target: scaffold0022 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 58517 - 58438
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgattcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||| |||  ||||||| |||||||||||||||||||    
T  58517 taagaaaaactactatttatacaaataatcctataactacctaatcatatctgttcgatttaaaatcgaaactagccgtt 58438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 58565 - 58634
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||    
T  58565 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatctgtgtaccaattttcattaag 58634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 8826 - 8757
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  8826 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 8757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 8874 - 8916
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactaccta 126  Q
    ||||||||||||||||||||||| |||| | ||||||||||||    
T  8874 taagaaaaactactatttatacaaatagacttataactaccta 8916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 44328 - 44259
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  44328 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 44259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 63838 - 63907
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  63838 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 63907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 54; Significance: 6e-22; HSPs: 9)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 25156 - 25087
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  25156 ctgtccgtatggaagcgacaaacgagtaacaagttgcaaagtatgaatatgtgcaccaattttcattaag 25087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 28654 - 28585
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  28654 ctgtccgtatggaagcgacaaacgagtaacaagttgcaaagtatgaatatgtgcaccaattttcattaag 28585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 390146 - 390214
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaa 86  Q
    |||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  390146 ctgtccgtatggaagagacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaa 390214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 115413 - 115344
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||| ||| || |||||||||||||||||||||| ||||| ||||||||||    
T  115413 ctgtccgtatggaagcgacaaacaagtcaccagttgcaaagtatgaatatgtgcaccaattttcattaag 115344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 129965 - 129896
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||| ||| || |||||||||||||||||||||| ||||| ||||||||||    
T  129965 ctgtccgtatggaagcgacaaacaagtcaccagttgcaaagtatgaatatgtgcaccaattttcattaag 129896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 115461 - 115520
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||| ||||||||||| |||| ||||||||| |||||||| | || |||||||    
T  115461 taagaaaaacttctatttatacaaatagacctataactgcctaatcatagccattcgatt 115520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 25204 - 25250
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatca 130  Q
    ||||||||||| ||||||||||| |||| ||||||||| ||||||||    
T  25204 taagaaaaacttctatttatacaaatagacctataactgcctaatca 25250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 28702 - 28748
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatca 130  Q
    ||||||||||| ||||||||||| |||| ||||||||| ||||||||    
T  28702 taagaaaaacttctatttatacaaatagacctataactgcctaatca 28748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 130012 - 130058
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatca 130  Q
    ||||||||||| ||||||||||| |||| ||||||||| ||||||||    
T  130012 taagaaaaacttctatttatacaaatagacctataactgcctaatca 130058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0358 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0358
Description:

Target: scaffold0358; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 15786 - 15848
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  15786 tatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 15848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0358; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 15731 - 15672
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||||||||||||| | |||| |||||||||||||| ||| | || |||||||    
T  15731 taagaaaaactactatttatagaaatagacctataactacctagtcatagccattcgatt 15672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0509 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0509
Description:

Target: scaffold0509; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 1287 - 1218
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||    
T  1287 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaacatgtgcaccaattttcattaag 1218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0509; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 7715 - 7646
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||    
T  7715 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaacatgtgcaccaattttcattaag 7646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 30654 - 30723
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||    
T  30654 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaacatgtgcaccaattttcattaag 30723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 6724 - 6655
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||    
T  6724 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaacatgtgcaccaattttcattaag 6655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 22683 - 22752
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||    
T  22683 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaacatgtgcaccaattttcattaag 22752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 85070 - 85139
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||||    
T  85070 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatatgtgcaccaatttccattaag 85139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 62210 - 62278
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||||    
T  62210 tgtccgtatggaagcgacaaacgaatcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 62278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 71388 - 71456
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||||    
T  71388 tgtccgtatggaagcgacaaacgaatcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 71456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 116477 - 116536
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    |||||||||||  ||||||| ||||||||||| |||||||||||||||||||||| ||||    
T  116477 tatggaagcgatgaacgagtcacaagttgcaatgtatgaatatgtgtaccaacttacatt 116536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 62161 - 62102
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||||||||||||||| |||| |||||||||||| ||||| | || |||||||    
T  62161 taagaaaaactactatttatacaaatagacctataactacccaatcatagccattcgatt 62102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 85022 - 84976
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatca 130  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||    
T  85022 taagaaaaactactatttatacaaatagacctataactacccaatca 84976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 71339 - 71302
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataact 121  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  71339 taagaaaaactactatttatacaaatagacctataact 71302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 18566 - 18497
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||||    
T  18566 ctgtccgtatggaagcgacaaacgagtcacaagttacaaagtatgaatatgtgcaccaattttcattaag 18497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 28097 - 28028
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||||    
T  28097 ctgtccgtatggaagcgacaaacgagtcacaagttacaaagtatgaatatgtgcaccaattttcattaag 28028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 5846 - 5778
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||| ||||||||||    
T  5846 tgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatctgtgcaccaattttcattaag 5778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 5895 - 5932
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataact 121  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  5895 taagaaaaactactatttatacaaatagtcctataact 5932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 8194 - 8274
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcga-ttcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||  ||||| || ||||||||| |||||||||    
T  8194 taagaaaaactactatttatacaaatagtcctataactacctaatcatatctgttcgatttgaaaatcgaacctagccgtt 8274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 15324 - 15404
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcga-ttcaaaatcgaaactagccgtt 163  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||  ||||| || ||||||||| |||||||||    
T  15324 taagaaaaactactatttatacaaatagtcctataactacctaatcatatctgttcgatttgaaaatcgaacctagccgtt 15404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 8146 - 8077
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||| ||||| ||||    
T  8146 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatttgtgcaccaattttcagtaag 8077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 15276 - 15207
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||| ||||| ||||    
T  15276 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaagtatgaatttgtgcaccaattttcagtaag 15207  T

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Target: scaffold0516 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 11322 - 11271
Alignment:
Q  36 caaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11322 caaacgagtcacaagttgcaaagtatgaatatgtgtaccaactttcattaag 11271  T

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Target: scaffold0019 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 151461 - 151399
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||    
T  151461 tatggaagcgacaaacgagtcacaagttgcaaagtatgaacatgtgcaccaattttcattaag 151399  T

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Target: scaffold0019; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 161806 - 161744
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||||||||||||| |||| ||||||||||||||||||| ||||| ||||| ||||||||||    
T  161806 tatggaagcgacaaatgagtcacaagttgcaaagtatgaacatgtgcaccaattttcattaag 161744  T

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Target: scaffold0019; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 151516 - 151558
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactaccta 126  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  151516 taagaaaaactactatttatacaaataggcctataactaccta 151558  T

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Target: scaffold0019; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 162075 - 162117
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactaccta 126  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  162075 taagaaaaactactatttatacaaataggcctataactaccta 162117  T

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Target: scaffold0060 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 32141 - 32209
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||| |||||||||||||||||||| | ||||||||||||||||| ||||| ||||| ||||||||||    
T  32141 tgtccgtatggaagcgacaaacgagtcaaaagttgcaaagtatgaacatgtgcaccaattttcattaag 32209  T

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Target: scaffold0003 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 33403 - 33340
Alignment:
Q  21 tccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||||||||||||| |||||||| |||||||| || |||||||||||||||||||||| ||||    
T  33403 tccatatggaagcgataaacgagtcacaagttggaatgtatgaatatgtgtaccaacttacatt 33340  T

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Target: scaffold0362 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 11363 - 11429
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    |||||| ||||||||||||||| |||| |||||||||||||||||||  |||||||||| |||||||    
T  11363 ctgtccgtatggaagcgacaaatgagtcacaagttgcaaagtatgaacctgtgtaccaaatttcatt 11429  T

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Target: scaffold0241 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 25145 - 25214
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||| ||||||||||||| |||||||||||||||||||||| || ||||| ||| ||||||    
T  25145 ctgtccgtatggatgcgacaaacgagtcacaagttgcaaagtatgaatatatgcaccaatttttattaag 25214  T

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Target: scaffold0241; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 25097 - 25038
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcctttcgatt 143  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| | || |||||||    
T  25097 taagaaaaactactatttatacaaatagacctataactacctaatcatagccattcgatt 25038  T

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Target: scaffold0193 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 26844 - 26775
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    |||||| |||||  ||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||||    
T  26844 ctgtccgtatggttgcgacaaacgattcacaagttgcaaagtatgaatatgtgcaccaattttcattaag 26775  T

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Target: scaffold0053 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 45300 - 45235
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||| |||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||| ||||    
T  45300 tgtccgtatggaagcggcaaacgagtcacaagttgcaatgtatgaatatgtgcaccaacttacatt 45235  T

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Target: scaffold0239 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 17054 - 16995
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    |||||||||||||||||||| ||||||||||| ||||||| ||||| |||||||| ||||    
T  17054 tatggaagcgacaaacgagtcacaagttgcaatgtatgaacatgtgcaccaacttacatt 16995  T

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Target: scaffold0107 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 32201 - 32252
Alignment:
Q  36 caaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcattaag 87  Q
    ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  32201 caaacgagtcacaagttgcaaagtatgaacatgtgtaccaaatttcattaag 32252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 29139 - 29088
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactacctaatcacatcc 135  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||| ||||    
T  29139 taagaaaaactactatttatacagatagacatataactacctagtcatatcc 29088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 107488 - 107547
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||| ||||    
T  107488 tatggaagcgataaacgagtcacaagttgcaatgtatgaatctgtgtaccaacttacatt 107547  T

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Target: scaffold0013; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 129232 - 129291
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||||||||| |||||||| ||||||||||| |||||||| |||||| |||||| ||||    
T  129232 tatggaagcgataaacgagtcacaagttgcaatgtatgaatctgtgtaacaacttacatt 129291  T

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Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 250147 - 250092
Alignment:
Q  21 tccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  250147 tccatatggaagcgagaaacgagtcacaagttgcaatgtatgaatttgtgtaccaa 250092  T

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Target: scaffold0059 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 68169 - 68110
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||||||||| |||||||| ||||||||||| |||||||| ||||||| ||||| ||||    
T  68169 tatggaagcgataaacgagtcacaagttgcaatgtatgaatctgtgtactaacttacatt 68110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 76274 - 76226
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtac 73  Q
    ||||||||||| |||||||| ||||||||||| |||||||| |||||||    
T  76274 tatggaagcgataaacgagtcacaagttgcaatgtatgaatctgtgtac 76226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 1748 - 1706
Alignment:
Q  84 taagaaaaactactatttatacagatagtcctataactaccta 126  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  1748 taagaaaaactactatttatacaaataggcctataactaccta 1706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 1796 - 1835
Alignment:
Q  18 ctgtccatatggaagcgacaaacgagttacaagttgcaaa 57  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  1796 ctgtccgtatggaagcgacaaacgagtcacaagttgcaaa 1835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 36396 - 36454
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||||| || |||||||| ||||||||||| ||||||| |||||||||||||| ||||    
T  36396 atggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaacttacatt 36454  T

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Target: scaffold0016 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 200191 - 200245
Alignment:
Q  25 tatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactt 79  Q
    ||||||||||| ||| |||| ||||||||||| |||||||| |||||||||||||    
T  200191 tatggaagcgagaaatgagtcacaagttgcaatgtatgaatctgtgtaccaactt 200245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 3761 - 3711
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| | ||||||||| |||||||||||||||||||    
T  3761 atggaagagagaaacgagtcaaaagttgcaatgtatgaatatgtgtaccaa 3711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 7494 - 7552
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||||| || |||||||| ||||||||||| ||||||| ||||||| |||||| ||||    
T  7494 atggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtatcaacttacatt 7552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 1465 - 1415
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| ||||||| |||||||||||    
T  1465 atggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaa 1415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 14205 - 14155
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| ||||||||||| ||||||| |||||||||||    
T  14205 atggaagagagaaacgagtcacaagttgcaatgtatgaacatgtgtaccaa 14155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 9055 - 9105
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||| ||| ||||||||||| |||||||||||||||||||    
T  9055 atggaagagagaaacaagtcacaagttgcaatgtatgaatatgtgtaccaa 9105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 102065 - 102015
Alignment:
Q  26 atggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaa 76  Q
    ||||||| || |||||||| | ||||||||| |||||||||||||||||||    
T  102065 atggaagagagaaacgagtcaaaagttgcaatgtatgaatatgtgtaccaa 102015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 20037 - 19972
Alignment:
Q  19 tgtccatatggaagcgacaaacgagttacaagttgcaaagtatgaatatgtgtaccaactttcatt 84  Q
    ||||| ||||||||| ||||| |||| ||||||||||| |||||||||  || |||||||| ||||    
T  20037 tgtccgtatggaagctacaaatgagtcacaagttgcaatgtatgaatagatgcaccaacttacatt 19972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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