View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21027_low_4 (Length: 281)

Name: NF21027_low_4
Description: NF21027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21027_low_4
NF21027_low_4
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-277)||(441830-442106)


Alignment Details
Target: scaffold0002 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 441830 - 442106
Alignment:
Q  1 gtgaaaacaaactgcctcttcaccattgctcttcaggtatgaacatcgactgtcagtttagcgctcgagtttgatcaatttgtgatatggcagccgcgtt 100  Q
    |||||||||| |||||||||||||||||||||| | ||| ||||||| ||||||||||||| | || |||||||||||||| ||||||||||||||||||    
T  441830 gtgaaaacaagctgcctcttcaccattgctctttaagtacgaacatcaactgtcagtttagtggtcaagtttgatcaatttttgatatggcagccgcgtt 441929  T
Q  101 gatgccactggcgttgcaaaggttgagtcccgataatcccttacttttgaactcattgtcgtaatggacacgtttatatctacacatggcctcatcgtgc 200  Q
    |||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  441930 gatgccactggcgttgcaaaggttgaatcctgataatcccatacttttgaactcattgtcgtaatggacacgtttatatctacacatggcctcattgtgc 442029  T
Q  201 ccatggtcttgtgtggcggacaatcagattgttccgttgaagcctccacaataatcacaattgttttcacaggttct 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  442030 ccatggtcttgtgtggcggacaatcagattgttccgttgaagcctccacaataatcacaattgttttcacagattct 442106  T

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