View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_high_12 (Length: 324)
Name: NF21028_high_12
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 51429873 - 51430142
Alignment:
| Q |
1 |
catgagagacggttgttcctgaagcagctcctaggtaaaggactttagcaccaggtttcttaataaaacaacnnnnnnnnngatatcaatataatgtatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51429873 |
catgagagacggttgttcctgaagcagctcctaggtaaaggactttagcaccaggtttcttaataaaacaacaaaaaaaa-gatatcaatataatgtatt |
51429971 |
T |
|
| Q |
101 |
tgaaggacaatgttaatgttacaggaatatgaagcaacttacaatccatatgttgtcgactcctccaaggacagcagctgccaacttggaacggaaaggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51429972 |
tgaaggacaatgttaatgttacaggaatatgaagcaacttacaatccatatgttgtcgactcctccaaggacagcagctgccaacttggaacggaaaggg |
51430071 |
T |
|
| Q |
201 |
ttccaaattctatactcagtcttagtaccatcctcgttctgcagaaa-aatgtcgcgaaattgtcattgca |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
51430072 |
ttccaaattctatactcagtcttagtaccatcctcgttctgcagaaagtgtgtcgcaaaattgtcattgca |
51430142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 17129021 - 17128916
Alignment:
| Q |
138 |
cttacaatccatatgttgtcgactcctccaaggacagcagctgccaacttggaacggaaagggttccaaattctatactcagtcttagtaccatcctcgt |
237 |
Q |
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|||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| | |
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| T |
17129021 |
cttacaatccatatgttgtcaacaccaccaaggacagcagctgccaacttggagcggaaagggttccaaattctatactcaacttttgtaccatcctcat |
17128922 |
T |
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| Q |
238 |
tctgca |
243 |
Q |
| |
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|||||| |
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| T |
17128921 |
tctgca |
17128916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17129167 - 17129100
Alignment:
| Q |
1 |
catgagagacggttgttcctgaagcagctcctaggtaaaggactttagcaccaggtttcttaataaaa |
68 |
Q |
| |
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|||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
17129167 |
catgagagacagttgtcccagaagcagctcctaagtaaaggactttagcaccaggtttctttataaaa |
17129100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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