View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_high_13 (Length: 319)
Name: NF21028_high_13
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 11861203 - 11860897
Alignment:
| Q |
12 |
catcatcaagaccgggatatagcggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatctttttccga |
111 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11861203 |
catcatcaagaccgggatatagtggcatggaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatcattttcccg |
11861104 |
T |
|
| Q |
112 |
tatgtctttttcccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaagaannnnnnngtattatcttgattgttcttt |
211 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| |||||||||| | |
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| T |
11861103 |
tatgtctttttcccaccaactttttagattaggacaatctgagattgcaagttccttcaaggatggaaagaattttggtgtattagtgtgattgttctct |
11861004 |
T |
|
| Q |
212 |
gcaatgaatttcaaagagtccaatctacgaagttggagaaccttgagacgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttca |
311 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11861003 |
gcaatgaatttcaaagagtccaatctccgaagttggagaaccttgagatgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttca |
11860904 |
T |
|
| Q |
312 |
aggtaaa |
318 |
Q |
| |
|
||||||| |
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|
| T |
11860903 |
aggtaaa |
11860897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 11829071 - 11828764
Alignment:
| Q |
12 |
catcatcaagaccgggatatagcggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatctttttccga |
111 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| | |
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| T |
11829071 |
catcatcaagaccgggatagagcagcatgcaagctaattgaggacagtattggatatttagctttgaaatgcaactgaaagatggtctatcattgtccca |
11828972 |
T |
|
| Q |
112 |
tatgtctttttcccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaagaannnnnnngtattatcttgattgttcttt |
211 |
Q |
| |
|
|||||| ||||||||||||| |||||| ||| |||||||||||||||| |||||||||||| |||||||||| |||| | |||||||||||||| |
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| T |
11828971 |
tatgtcattttcccaccaaccttttagtttaagacaatctgagattgttagttccttcaaggatggaaagaatataggtgtatcagcttgattgttcttt |
11828872 |
T |
|
| Q |
212 |
gcaatgaatttcaaagagtccaatctacgaagttggagaaccttgagacgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttca |
311 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||| |||| |
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| T |
11828871 |
gcaataaatttcaaagagtccaatctccgaagttggagaaccttgagatgtggaagctcatccattggtgggagaaattcgcatttgggacagtcattca |
11828772 |
T |
|
| Q |
312 |
aggtaaac |
319 |
Q |
| |
|
|||||||| |
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|
| T |
11828771 |
aggtaaac |
11828764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 11901309 - 11901477
Alignment:
| Q |
12 |
catcatcaagaccgggatatagcggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatctttttccga |
111 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| | ||||||| ||||||| ||||| |||||||||||||||||| |||||||||| || || | |
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|
| T |
11901309 |
catcatcaagaccaggatatagaggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaactgaaatatggtctatcattacccca |
11901408 |
T |
|
| Q |
112 |
tatgtctttttcccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaa |
180 |
Q |
| |
|
|| || ||||||||||||||||| |||||||||||||| || |||||||||||||||||| ||||||| |
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|
| T |
11901409 |
aatctcattttcccaccaacttttcagattaggacaatccgaaattgtaagttccttcaaggatggaaa |
11901477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 12 - 180
Target Start/End: Complemental strand, 12039992 - 12039824
Alignment:
| Q |
12 |
catcatcaagaccgggatatagcggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatctttttccga |
111 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| || |||||||||| |||||| || |||||||||||||||||||||||||| || ||| | |
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|
| T |
12039992 |
catcatcaagattaggatatagtggcatgcaagctaacttggggcaatattggacatttagtttggaaatgcaactgaaagatggtctatcattatccca |
12039893 |
T |
|
| Q |
112 |
tatgtctttttcccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaa |
180 |
Q |
| |
|
||| || ||||||||||||| |||||||| |||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
12039892 |
tatctcagtttcccaccaactgtttagatttggacaatccgagattgtaagttccttcaaggatggaaa |
12039824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 198 - 319
Target Start/End: Original strand, 11901516 - 11901637
Alignment:
| Q |
198 |
cttgattgttctttgcaatgaatttcaaagagtccaatctacgaagttggagaaccttgagacgtggaagctgatccattggtgggagaaatttgcaatt |
297 |
Q |
| |
|
|||||||||| | |||||||||||||| |||||||| ||| |||| |||||||||||||||| ||||||||||||||||||| |||||||| | ||| || |
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|
| T |
11901516 |
cttgattgttttctgcaatgaatttcagagagtccagtctccgaatttggagaaccttgagatgtggaagctgatccattggggggagaaactcgcattt |
11901615 |
T |
|
| Q |
298 |
gggacagtcgttcaaggtaaac |
319 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11901616 |
gggacagtcgttcaaggtaaac |
11901637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 198 - 319
Target Start/End: Complemental strand, 12039785 - 12039664
Alignment:
| Q |
198 |
cttgattgttctttgcaatgaatttcaaagagtccaatctacgaagttggagaaccttgagacgtggaagctgatccattggtgggagaaatttgcaatt |
297 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||| || ||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||| || |
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| T |
12039785 |
cttgattgttttttgcaatgaatttcagtgagtccaaccttcgaagttggagaaccttgagatgtggaagctcatccattggcgggagaaattcgcattt |
12039686 |
T |
|
| Q |
298 |
gggacagtcgttcaaggtaaac |
319 |
Q |
| |
|
|| ||||| |||||||||||| |
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|
| T |
12039685 |
tgggcagtcattcaaggtaaac |
12039664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 11732876 - 11732725
Alignment:
| Q |
35 |
ggcatgcaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatctttttccgatatgt---ctttttcccaccaac |
131 |
Q |
| |
|
|||| ||| ||||| | ||||||| || |||||||||| |||||||||||| |||||||||||| | ||||| | || | | | ||||||||||||| |
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|
| T |
11732876 |
ggcacgcatgctaatttaggacaacatcggatatttagttttgaaatgcaagggaaagatggtctgttttttttcaatgtcttatcattttcccaccaac |
11732777 |
T |
|
| Q |
132 |
tttttagattaggacaatctgagattgtaagttccttcaagcatggaaagaa |
183 |
Q |
| |
|
||| || ||||||||||| || |||||||| ||||||||| ||||||||| |
|
|
| T |
11732776 |
tttcgagtttaggacaatccgaaattgtaagctccttcaaggctggaaagaa |
11732725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 319
Target Start/End: Complemental strand, 11732676 - 11732568
Alignment:
| Q |
211 |
tgcaatgaatttcaaagagtccaatctacgaagttggagaaccttgagacgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttc |
310 |
Q |
| |
|
||||||||||| | ||| ||||| || ||||| |||||| |||||||| |||||| ||||| ||||| || ||||||||||| || |||||||| || |
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|
| T |
11732676 |
tgcaatgaattcaagagattccaacctccgaagatggagagccttgagatttggaaggtgatcgattggcggtagaaatttgcatttaggacagtcactc |
11732577 |
T |
|
| Q |
311 |
aaggtaaac |
319 |
Q |
| |
|
||||||||| |
|
|
| T |
11732576 |
aaggtaaac |
11732568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 11973736 - 11973793
Alignment:
| Q |
124 |
ccaccaactttttagattaggacaatctgagattgtaagttccttcaagcatggaaag |
181 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
11973736 |
ccaccacctcttgagattaggacaatctgagattgtgagttcctccaaagatggaaag |
11973793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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