View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_high_21 (Length: 261)
Name: NF21028_high_21
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 39075758 - 39075513
Alignment:
| Q |
12 |
atgaagcacaaaatcaacaatgtgaagtttcgtctcatcgaatcttccactttagtaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaat |
111 |
Q |
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| T |
39075758 |
atgaagcacaaaatcaacaatgtgaagttttgtctcatcgaatcttccactttagtaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaat |
39075659 |
T |
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| Q |
112 |
ccnnnnnnnnnnnnnnnnnnnngagaaaataataatatcttcactgcaagcgcttttaagtcacgtttggcgtttaattataagtaaacaaaatcttaaa |
211 |
Q |
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| T |
39075658 |
c---agtagtagtaatagtagtgagaaaataataatatcttcattgcaagcgcttttaagtcacgtttggcgtttaattataagtaaacaaaatcttaaa |
39075562 |
T |
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| Q |
212 |
ccagaagaaaggtctgctttcgtgttacccatagattgtaggacaagaa |
260 |
Q |
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| T |
39075561 |
ccagaagaaaggtctgctttcgtgttacccatagattgtaggacaagaa |
39075513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 7398876 - 7398762
Alignment:
| Q |
146 |
atatcttcactgcaagcgcttttaagtcacgtttggcgtttaattataagtaaacaaaatcttaaaccagaagaaaggtctgctttcgtgttacccatag |
245 |
Q |
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| T |
7398876 |
atatcttcattgcaagcgcttttaagtcacctttggcgtttatttataagtaaacaaaatcgtaattcagaagaaaggtcggcattcgtgttacccatag |
7398777 |
T |
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| Q |
246 |
attgtaggacaagaa |
260 |
Q |
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| T |
7398776 |
attgtagaacaagaa |
7398762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 7399011 - 7398917
Alignment:
| Q |
17 |
gcacaaaatcaacaatgtgaagtttcgtctcatcgaatcttccactttagtaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaat |
111 |
Q |
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| T |
7399011 |
gcacaaaatcaacaatgtgatgtttcgtctaatcgaatcttccactttactaaagaacaaattctgcaactcaaatcaaaagctaatgcagaaat |
7398917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 260
Target Start/End: Complemental strand, 34174625 - 34174413
Alignment:
| Q |
45 |
ctcatcgaatcttccactttagtaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaatccnnnnnnnnnnnnnnnnnnnngagaaaataat |
144 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
34174625 |
ctcatcgaatcttccacttcacaaaggaacaaattctgcaactcaaatcaaaagctaatgcagaaat---tagtagtagttgcggtggtgataaaataat |
34174529 |
T |
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| Q |
145 |
aatatcttcactgcaagcgcttttaagtcacgtttggcgtttaattataagtaaacaaaatcttaaaccagaagaaaggtctgctttcgtgttacccata |
244 |
Q |
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|||||||||| ||||||| |||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||| ||| |
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| T |
34174528 |
aatatcttcattgcaagcacttttaagccacttttggcgtttaactataagtaaacaaaatcttaaaccagaagaaaataccattttcaggttaccaata |
34174429 |
T |
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| Q |
245 |
gattgtaggacaagaa |
260 |
Q |
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|||||||||||||||| |
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| T |
34174428 |
gattgtaggacaagaa |
34174413 |
T |
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