View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_high_23 (Length: 250)
Name: NF21028_high_23
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 5484708 - 5484950
Alignment:
| Q |
1 |
aaataaatttataattgtaacttacggggaagtggtaaattttatccaaacctacttgtaatatagcttatctttaccnnnnnnnggcgatcataatatt |
100 |
Q |
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| T |
5484708 |
aaataaatttttaattgtaacttacggggaagtggtaaattttatccaaacctacttgtaatatagcttatctttacttttttttggcgatcataatatt |
5484807 |
T |
|
| Q |
101 |
gcttatcttaatcgcataatagaaggaaattatccacatattatatgacatttaattgaatgatttccattaagatttgtatacatggttagtgtaannn |
200 |
Q |
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| T |
5484808 |
gcttatcttaatcacataatagaaggaaattatccacatattatatgacatttaattgaatgatttccattacgatttgtatacatggttagtgtaattt |
5484907 |
T |
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| Q |
201 |
nnnnnnnnacatgtatccaatcacatttcaccttttagatatt |
243 |
Q |
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||||| |||||||||||| |||||||||||||||| |
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| T |
5484908 |
ttttttttacatgcatccaatcacatctcaccttttagatatt |
5484950 |
T |
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