View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_high_27 (Length: 228)
Name: NF21028_high_27
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 40282565 - 40282497
Alignment:
| Q |
141 |
cagtaatattttgtattttaaacacatcccacctctttctctctgatacaacttttcctaagtcctact |
209 |
Q |
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| T |
40282565 |
cagtaatattttgtattttaaacacatcccacctctttctctctgatacaacttttcctaagtcctact |
40282497 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 40282638 - 40282587
Alignment:
| Q |
18 |
atcaaaaaataaaatattgagccttggatcattgggtggaccacatttaaat |
69 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
40282638 |
atcaaaaaataaaatatcgagccttggatcactgggtggaccacatttaaat |
40282587 |
T |
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