View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_high_28 (Length: 227)
Name: NF21028_high_28
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_high_28 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 41080364 - 41080143
Alignment:
| Q |
6 |
aaaattttaccagctagggaattacttaggtatatgttaatgtcactcatnnnnnnngtgataaaatattttgctcccaagtcagctgcaagatggtttg |
105 |
Q |
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| T |
41080364 |
aaaattttaccagctagggaattacttaggtatatgttaatgtcactcataaaaaaagtgataaaatattttgctcctaagtcagcagcaagatggtttg |
41080265 |
T |
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| Q |
106 |
gaacaagtaacaaatcaccagtgaatttcaaaactggtgttgatcattttgtgctccacactggaggaaaagcagtgatagatggaattgggatgagttt |
205 |
Q |
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| T |
41080264 |
gaacaagtagcaaatcaccagtgaatttcaaaactggtgttgatcattttgtgctccacactggaggaaaagcagtgatagatggaattgggatgagttt |
41080165 |
T |
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| Q |
206 |
agatctgaatgattatgaccta |
227 |
Q |
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| T |
41080164 |
agatctgaatgattatgaccta |
41080143 |
T |
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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 23111181 - 23111273
Alignment:
| Q |
117 |
aaatcaccagtgaatttcaaaactggtgttgatcattttgtgctccacactggaggaaaagcagtgatagatggaattgggatgagtttagat |
209 |
Q |
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| T |
23111181 |
aaatcaccattgaatttcaaaactggagttgatcatttttgcctccacactggaggaaaagcagtgattgatggaattggaatgagtttagat |
23111273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 23073156 - 23073064
Alignment:
| Q |
117 |
aaatcaccagtgaatttcaaaactggtgttgatcattttgtgctccacactggaggaaaagcagtgatagatggaattgggatgagtttagat |
209 |
Q |
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| T |
23073156 |
aaatcaccattgaatttcaaaactggagttgatcatttttgcctccacacaggaggaaaagcagtgattgatggaattggaatgagtttagat |
23073064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 23077761 - 23077667
Alignment:
| Q |
117 |
aaatcaccagtgaatttcaaaactggtgttgatcattttgtgctccacactggaggaaaagcagtgatagatggaattgggatgagtttagatct |
211 |
Q |
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||||||||| ||||||| ||||||||||||||||||||| ||||| || ||||||||||||||||| |||||| |||| | |||||||||||| |
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| T |
23077761 |
aaatcaccattgaattttaaaactggtgttgatcatttttgcctccatacaggaggaaaagcagtgattgatggagttggaaagagtttagatct |
23077667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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