View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_high_6 (Length: 433)
Name: NF21028_high_6
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 41705290 - 41704886
Alignment:
| Q |
19 |
ctttgagcacagaaccaaactgtggcgatccattctatagacttcgttgcgatcctcattctcaaaagctttactttgacactctcaatggcagttccta |
118 |
Q |
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| T |
41705290 |
ctttgagcacagaaccaaactgtggcgatccattctatagacttcgttgtgatcctcattctcaaaagctttactttgacactctcaatggcagttccta |
41705191 |
T |
|
| Q |
119 |
tgttgtactaagaatcatgtcttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaat |
218 |
Q |
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| T |
41705190 |
tgttgtactaagagtcatgtcttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaat |
41705091 |
T |
|
| Q |
219 |
ggtatttggttaaatcagtcacttcctttcaacataacttcatccaacacagtgttcattttcaactgttcccctcgtctcttggtttctcctcttaact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705090 |
ggtatttggttaaatcagtcacttcctttcaacataacttcatccaacacagtgttcattttcaactgttcccctcgtctcttggtttctcctcttaact |
41704991 |
T |
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| Q |
319 |
gctcttcctctagtatttgtcaccgttacttggaaaattcaggtcatgttgacacaaatcgagcacttgagtgtgcaagtggtcttcacccttgttgcac |
418 |
Q |
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| T |
41704990 |
gctcttcctctagtatttgtcaccgttacttggaaaattcaggtcaagttgacacaaatcgagcacttgagtgtgcaagtggtcttcacccttgttgcac |
41704891 |
T |
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| Q |
419 |
ctttg |
423 |
Q |
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| T |
41704890 |
ctttg |
41704886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 1453360 - 1453265
Alignment:
| Q |
140 |
ttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
235 |
Q |
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| T |
1453360 |
ttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
1453265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 1465052 - 1464957
Alignment:
| Q |
140 |
ttcgatccagcgtatggtgttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
235 |
Q |
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| T |
1465052 |
ttcgatccaacgcatggtggtgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
1464957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 1441044 - 1441012
Alignment:
| Q |
19 |
ctttgagcacagaaccaaactgtggcgatccat |
51 |
Q |
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| T |
1441044 |
ctttgagcacagaaccaaattgtggcgatccat |
1441012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 7564146 - 7564110
Alignment:
| Q |
172 |
cttggttacccggttcatgtgtcacacaagacatgcc |
208 |
Q |
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| T |
7564146 |
cttggttacctggttcatgtgttacacaagacatgcc |
7564110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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