View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_low_1 (Length: 639)
Name: NF21028_low_1
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 407 - 623
Target Start/End: Original strand, 33581281 - 33581501
Alignment:
| Q |
407 |
ctcatgtgaaaaaagtaaaagatgattttcaggcaggaaatgtaggtatagctgtatagg----tatacatgttttgatatttagtagtatgagaccaat |
502 |
Q |
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| T |
33581281 |
ctcatgtggaaaaagtaaaaggtgattttcaggcaggaaatgtaggtatagctgtataggtaggtatacatgttttgatatttagtagtatgagaccaat |
33581380 |
T |
|
| Q |
503 |
ggtacaaatatgtgaaaagagggaaaagcataaatggtataagatatggtaaaacaaaaacggcaaacatttcctttacagtttacacttggtgtgaaag |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33581381 |
ggtacaaatatgtgaaaagagggaaaagcataaatggtataagatatggtaaaacaaaaacggcaaacatttcctttacagtttacacttggtgtgaaag |
33581480 |
T |
|
| Q |
603 |
ttacaatttactactgttttt |
623 |
Q |
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||||||||||||||||||||| |
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| T |
33581481 |
ttacaatttactactgttttt |
33581501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 264
Target Start/End: Original strand, 33581007 - 33581273
Alignment:
| Q |
3 |
aaaggagatgtcttttcttgtaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactg |
102 |
Q |
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| T |
33581007 |
aaaggagatgtcttttcttgaaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactt |
33581106 |
T |
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| Q |
103 |
aaccccggtagtctccttcaattgacaaagcatttgcaagctgtgagttgaagttgcaagaccacaacttcgttgaaatccttcaacaaa--aaactatg |
200 |
Q |
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| T |
33581107 |
aacctcggtagtctccttcaattgacaaagcctttgcaagctgtgagttgaagttacaagaccacaacttcgttgaaatccttcaacaaaataaacaaaa |
33581206 |
T |
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| Q |
201 |
aac-atg--tatgtagtagaagcagcattagctagtaagatttagatgcaatgcagtcaaactgata |
264 |
Q |
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||| | | |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
33581207 |
aactaagaatatgtagtagaagcagcattagctagtaagatttgcatgcaatgcagtcaaattgata |
33581273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 32356315 - 32356505
Alignment:
| Q |
3 |
aaaggagatgtcttttcttgtaacctttcaaaactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactg |
102 |
Q |
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| T |
32356315 |
aaaggagatgtcttttcttgtagcctttcactactaacctgcaactctgggtagcgtacttcagtagcacaggcatatccacattctaaggcggagattg |
32356414 |
T |
|
| Q |
103 |
aaccccggtagtctccttcaattgacaaagcatttgcaagctgtgagttgaagttgcaagaccacaacttcgttgaaatccttcaacaaaa |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
32356415 |
aaccccggtagtctccttcaattgacaaagcatttgcaagctgtgagttgaagttgcaagaccacaactttgttgaaatccttcaataaaa |
32356505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 362 - 470
Target Start/End: Original strand, 32356666 - 32356774
Alignment:
| Q |
362 |
tcatatattaaaaacctttgacatatatattatcagacatgaatactcatgtgaaaaaagtaaaagatgattttcaggcaggaaatgtaggtatagctgt |
461 |
Q |
| |
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||||||||| || |||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| || | ||||||||||| |||||| |
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| T |
32356666 |
tcatatattgaacacctttgacatatatattatcagacacgaatactcatgtggaaaaagtaaaaggtgattttcaagctgaaaatgtaggtaaagctgt |
32356765 |
T |
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| Q |
462 |
ataggtata |
470 |
Q |
| |
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||||||||| |
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| T |
32356766 |
ataggtata |
32356774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 32356583 - 32356621
Alignment:
| Q |
285 |
ataaataatttactattccaagcccagaatttatgaatt |
323 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
32356583 |
ataaataatttactattccagacccagaatttatgaatt |
32356621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 42305409 - 42305452
Alignment:
| Q |
187 |
aacaaaaaactatgaacatgt--atgtagtagaagcagcattag |
228 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
42305409 |
aacaaaaaactatgaacatgtcgatgtggtagaagcagcattag |
42305452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 4e-49; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 17922281 - 17922440
Alignment:
| Q |
34 |
aactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactgaaccccggtagtctccttcaattgacaaagc |
133 |
Q |
| |
|
|||||||||||| ||||||||| |||||| | ||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||| ||| |
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| T |
17922281 |
aactaacctgcatctctgggtagggtactttactagcacagacatatccacgttctatggccgagactgaaccccggtagtctccttcagttgacagagc |
17922380 |
T |
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| Q |
134 |
atttgcaagctgtgagttgaagttgcaagaccacaacttcgttgaaatccttcaacaaaa |
193 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||| |
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| T |
17922381 |
atttgcaagctgtgagttgaagttgcaagaccacaacttcattgaaaacctttaacaaaa |
17922440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 611
Target Start/End: Original strand, 17969902 - 17970013
Alignment:
| Q |
505 |
tacaaatatgtgaaaagagggaaaagcataaatggtataagat----atggtaaaacaaaaacggcaaacatttcctttacagtttacact-tggtgtga |
599 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||| | | |||| |||||| ||||||||| |||||||| ||| |||| ||||| | |
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| T |
17969902 |
tacaaatgtgtgaaaagagggaaaagcataaattatataagattttaagagaaaaaaaaaaacagcaaacattacctttacaattttcactcgggtgtaa |
17970001 |
T |
|
| Q |
600 |
aagttacaattt |
611 |
Q |
| |
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|||||||||||| |
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| T |
17970002 |
aagttacaattt |
17970013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 193
Target Start/End: Original strand, 17956035 - 17956190
Alignment:
| Q |
38 |
aacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactgaaccccggtagtctccttcaattgacaaagcattt |
137 |
Q |
| |
|
|||| |||| ||||| ||| ||||||||| |||| || || || || ||||||| ||||| ||||| | |||| |||||||| |||| ||||| ||| |
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| T |
17956035 |
aaccagcaactctggatagcgtacttcagtagcatagttatgtcaacgttctaagagggagagtgaactcgggtaccctccttcatttgaaaaagctttt |
17956134 |
T |
|
| Q |
138 |
gcaagctgtgagttgaagttgcaagaccacaacttcgttgaaatccttcaacaaaa |
193 |
Q |
| |
|
||||||| ||||||| ||| || |||| | |||||||||||| || | ||||||| |
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| T |
17956135 |
gcaagcttggagttgatgttacatgacctccacttcgttgaaaaccgttaacaaaa |
17956190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 17969594 - 17969646
Alignment:
| Q |
187 |
aacaaaaaactatgaacatgtatgtagtagaagcagcattagctagtaagattt |
240 |
Q |
| |
|
|||||||||||| || ||||| ||||||||||||||||| ||| |||||||||| |
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|
| T |
17969594 |
aacaaaaaactaagaccatgt-tgtagtagaagcagcatcagcaagtaagattt |
17969646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 17969494 - 17969586
Alignment:
| Q |
101 |
tgaaccccggtagtctccttcaattgacaaagcatttgcaagctgtgagttgaagttgcaagaccacaacttcgttgaaatccttcaacaaaa |
193 |
Q |
| |
|
||||||| ||||||||| ||| ||| ||||||||||| | ||| |||||| ||||||||| || ||||| ||||||| |||| ||||||| |
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|
| T |
17969494 |
tgaacccgggtagtctcaatcagctgaagaagcatttgcatgttgtaagttgaggttgcaagaacaaaactttgttgaaaacctttaacaaaa |
17969586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 8024603 - 8024690
Alignment:
| Q |
34 |
aactaacctgcaaatctgggtagtgtacttcagcagcacaggcatatccacattctaaggcggagactgaaccccggtagtctccttc |
121 |
Q |
| |
|
||||||||||||| ||||||||| |||||| || ||||||| ||||||||| ||||||||| |||||||||||| ||||||||||||| |
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| T |
8024603 |
aactaacctgcaactctgggtagggtactttagtagcacagacatatccacgttctaaggccgagactgaaccctggtagtctccttc |
8024690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 8024847 - 8024907
Alignment:
| Q |
118 |
cttcaattgacaaagcatttgcaagctgtgagttgaagttgcaagaccacaacttcgttga |
178 |
Q |
| |
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||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8024847 |
cttcagttgccaaagcatttgcaagctgtaagttgaagttgcaagaccacaacttcgttga |
8024907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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