View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_low_10 (Length: 381)
Name: NF21028_low_10
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 4093197 - 4092848
Alignment:
| Q |
16 |
atcattctgtgtttaaactggtagattccgcaggttctgatgctgaagcataattggcgcaaataataactcggtccctgcaggttcggagcttgtagca |
115 |
Q |
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| T |
4093197 |
atcattctgtgtttaaactggtagattccgcaggttctgatgctgaagcataattggcgcaaataataactcggtccctgcaggttcggagcttgtagca |
4093098 |
T |
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| Q |
116 |
taattggtgtgcataataactggaagactcttcaagatccattcaaatacccatgaaagagcgctaaccagcacacatatagtccatccagcagtattca |
215 |
Q |
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| T |
4093097 |
taattggtgtgcataataactggaagactcttcaagatccattcaaatacccatgaaagagcgctaaccagcacacatatagtccatccagcagtattca |
4092998 |
T |
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| Q |
216 |
acggtacgcaatctgctaggccttttgcatactgaatcaccaaaacctgcattacaacacaactgcctaaagccaccgagaaaatcaagttctgaacaat |
315 |
Q |
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| T |
4092997 |
acggtacgcaatctgctaggccttttgcatactgaatcaccaaaacctgcattacaacacaactgcctaaagccaccgagaaaatcaagttctgaacaat |
4092898 |
T |
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| Q |
316 |
catcttcaaaccttgttttttcaacaaatatacgttattgagcagattaa |
365 |
Q |
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| T |
4092897 |
catcttcaaaccttgttttttcaacaaatatacgttattgagcagattaa |
4092848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 298
Target Start/End: Original strand, 42591709 - 42591861
Alignment:
| Q |
146 |
ttcaagatccattcaaatacccatgaaagagcgctaaccagcacacatatagtccatccagcagtattcaacggtacgcaatctgctaggccttttgcat |
245 |
Q |
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| T |
42591709 |
ttcaagatccattcaagtacccatgaaaaagcaccaaccatgacacagatggcccatctagtggcattcagccgcatgcaatatgccaggccttttgcat |
42591808 |
T |
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| Q |
246 |
actgaatcaccaaaacctgcattacaacacaactgcctaaagccaccgagaaa |
298 |
Q |
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||| ||| |||| |||||||| |||| |||||| ||||||||||| |||||| |
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| T |
42591809 |
actcaataaccactacctgcataacaaaacaactacctaaagccactgagaaa |
42591861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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