View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_low_11 (Length: 369)
Name: NF21028_low_11
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 43389301 - 43389041
Alignment:
| Q |
1 |
gaaaacaaaataaatcaagagagccatagagaaaaaggtaaaaagaatgaatgaatgttgtaggattcaaccttgatgaaactagacttaagtcctaaaa |
100 |
Q |
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| T |
43389301 |
gaaaacaaaataaatcaagagagccatagagaaaaaggtaaaaagaatgaatgaatgttgtaggattcaaccttgatgaaactagacttaagtcctaaaa |
43389202 |
T |
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| Q |
101 |
aactatgaataacattttaatatgaattagctttttagttttcccataatgtataaaatattaaatggggtccgggcgttggatatttgtgaatccatat |
200 |
Q |
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| T |
43389201 |
aactatgaataacattttaatatgaattagctttttagttttcccataatgtataaaatattaaatggggtccgggcgttggatatttgtgaatccatat |
43389102 |
T |
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| Q |
201 |
tacatctgcagtcgagattctctagtttgtattttattagcaaagaagaaaacttgatttc |
261 |
Q |
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| T |
43389101 |
tacatctgcagtcgagattctctagtttgtattttattagcaaagaagaaaacttgatttc |
43389041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 43389006 - 43388967
Alignment:
| Q |
286 |
tggtaatattttaagggacgtgaattgggcaggtagacta |
325 |
Q |
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| T |
43389006 |
tggtaatattttaagggacgtgaattgggcaggtagacta |
43388967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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