View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_low_12 (Length: 367)
Name: NF21028_low_12
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 39075151 - 39075479
Alignment:
| Q |
20 |
accttcttctgctccaccaagcacaataactctaccaatatttcttttaagtccaacaccatttctaactgcaattgccttaccccaaccaaagtcattg |
119 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39075151 |
accttcttcttcaccaccaagcacaataactctaccaatatttcttttaagtccaacaccatttctaactgcaattggcttaccccaaccaaagtcattg |
39075250 |
T |
|
| Q |
120 |
ccgtaataattgaaccgtggtgaactgcttgctatcaacaaattacttgatgatctacctgcctccgatatagacggggttttcaaccaagactcataat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
39075251 |
ccgtaataattgaaccgtggtgaactgcttgctatcaacaaattacttgatgatctacctgcctccggtatagacggggttttcaaccaagactcatagt |
39075350 |
T |
|
| Q |
220 |
tactcactaacttttcatgatgagattttgatgaaatctccttattcatttccattgcaattttaccaatcccactttccattaattcccctactttcat |
319 |
Q |
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|| |||||| ||| ||||||||||||| | || ||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39075351 |
tattcactaccttctcatgatgagattgtatagatatcaccttgttcatttccatagcaattttaccaatcccactttccattaattcccctacttgcat |
39075450 |
T |
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| Q |
320 |
tattacatacccagttgctccgattccac |
348 |
Q |
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||||||||| ||||||||||||||||||| |
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| T |
39075451 |
tattacatatccagttgctccgattccac |
39075479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 7398400 - 7398727
Alignment:
| Q |
20 |
accttcttctgctccaccaagcacaataactctaccaatatttcttttaagtccaacaccatttctaactgcaattgccttaccccaaccaaagtcattg |
119 |
Q |
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|||||||||| | |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| |
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| T |
7398400 |
accttcttcttccccaccaagcacattaactataccaatatttcttttaagtccaacaccatttctaactgcaataggcttaccccaaccgaagtcatta |
7398499 |
T |
|
| Q |
120 |
ccgtaataattgaaccgtggtgaactgcttgctatcaacaaattacttgatgatctacctgcctccgatatagacggggttttcaaccaagactcataat |
219 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || ||| ||| ||| ||||| |||||||||||||| ||| || |
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| T |
7398500 |
ccgtagtaattgaaccgtggtgaactgcttgctatcaacaaattacttgctgatttaactggctctagtatcgacggcgttttcaaccaagattcaatat |
7398599 |
T |
|
| Q |
220 |
tactcactaacttttcatgatgagattttgatgaaatctccttattcatttccattgcaattttaccaatcccactttccattaattcccctactttcat |
319 |
Q |
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||||| || ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| || ||| |
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| T |
7398600 |
cactcattatcttctcatgatgagattttgatgaaatctccttgttcatttccatagcaattttaccaatcccactttccattaactcccctatttgcat |
7398699 |
T |
|
| Q |
320 |
tattacatacccagttgctccgattcca |
347 |
Q |
| |
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||||||| | ||| ||||||||||||| |
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| T |
7398700 |
tattacacatccaactgctccgattcca |
7398727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 34174071 - 34174143
Alignment:
| Q |
46 |
taactctaccaatatttcttttaagtccaacaccatttctaactgcaattgccttaccccaaccaaagtcatt |
118 |
Q |
| |
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||||| |||| |||||| ||| ||||||||| ||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
34174071 |
taactttaccgatatttttttgaagtccaaccccattcctaactgcaattggcttaccccaaccaaagtcatt |
34174143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 327
Target Start/End: Original strand, 34174222 - 34174358
Alignment:
| Q |
194 |
cggggttttcaaccaagactcataattactcactaacttttcatgatgagattttgatgaaatctccttattcatttccattgcaattttaccaatccca |
293 |
Q |
| |
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||| ||||||||||||||||| || ||| ||| || ||| ||||||||||||| |||||| ||| ||||||||||| ||| |||||||| ||| |
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| T |
34174222 |
cggtgttttcaaccaagactcgtagttattcattaccttctcatgatgagattccttagaaatcatcttgttcatttccatagcagccttaccaatacca |
34174321 |
T |
|
| Q |
294 |
ctttcc---attaattcccctactttcattattacat |
327 |
Q |
| |
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| |||| || ||||||||||||||||| ||||||| |
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| T |
34174322 |
ccttccttaatcaattcccctactttcatgattacat |
34174358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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