View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_low_13 (Length: 353)
Name: NF21028_low_13
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 2628143 - 2628476
Alignment:
| Q |
1 |
caggaaatgtcccctcacggctggagatggtccgatggaaatggaaggattgagaccgatattcacagcaacatattcatcaagtctagtcttctcaacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2628143 |
caggaaatgtcccctcacggctggagatggtccgatggagatggaaggattgagaccgatattcacaccaacatattcatcaagtctagtcttctcaacg |
2628242 |
T |
|
| Q |
101 |
aagaagatttcaaaagtatgcatggaaacacataagctgctttggattattattattatatatctattaatagtgattcttatatggctacatattttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628243 |
aagaagatttcaaaagtatgcatggaaacacataagctgctttggattattattattatatatctattaatagtgattcttatatggctacatattttgg |
2628342 |
T |
|
| Q |
201 |
aaacattgacaagatggttgcagctatgagagctttcaaagggttgtaccaaactctatttttgtgtagaagaggatttgctgaatttacctcacaaggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2628343 |
aaacattgacaagatggttgcagctatgagagctttcaaagggttgtaccaaactctaattttgtgtagaagaggatttgctgaatttacctcacaaggt |
2628442 |
T |
|
| Q |
301 |
cttggcggaaaagagttgatgcaaagccctatgg |
334 |
Q |
| |
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||| |||||||||||||||| ||||||||||||| |
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| T |
2628443 |
cttagcggaaaagagttgatacaaagccctatgg |
2628476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 2553073 - 2552768
Alignment:
| Q |
20 |
gctggagatggtccgatggaaatggaaggattgagaccgatattcacagcaacatattcatcaagtctagtcttctcaacgaagaagatttcaaaagtat |
119 |
Q |
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| T |
2553073 |
gctggagatggtctgatggaaatcgaaggattaaca--gatatttacaccaacatattcaccaagtctagccttctcaatgaagaagacttcacaagcat |
2552976 |
T |
|
| Q |
120 |
gcatggaaacacataagctgctttggattattattattatatatctattaatagtgattcttatatggctacatattttggaaacattgacaagatggtt |
219 |
Q |
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| T |
2552975 |
gcatggaaatacaaaagctgctttggattattat------atatctatcaatagtgattcctatatggctacatattttgggaacatggacaagatggtt |
2552882 |
T |
|
| Q |
220 |
gcagctatgagagctttcaaagggttgtaccaaactctatttttgtgtagaagaggatttgctgaatttacctcacaaggtcttggcggaaaagagttga |
319 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |
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| T |
2552881 |
gcagcaatgagagctttcaaagggttgtataaaactctatttttaagtagaagaggatttgctgaattaacctcacaaggtcttagaggaaaagagttga |
2552782 |
T |
|
| Q |
320 |
tgcaaagccctatgg |
334 |
Q |
| |
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||| ||||||||||| |
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| T |
2552781 |
tgc-aagccctatgg |
2552768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 39519610 - 39519333
Alignment:
| Q |
13 |
cctcacggctggagatggtccgatggaaatggaaggattgagaccgatattcacagcaacatattcatcaagtctagtcttctcaacgaagaagatttca |
112 |
Q |
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|||||||||||| || |||| ||||||||| ||||| || | | ||||| ||| ||||||||||| ||| ||||| ||||||||||||||||| ||| |
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| T |
39519610 |
cctcacggctggggacggtctgatggaaattgaagggttaacaa--atatttacaccaacatattcaccaattctagccttctcaacgaagaagaattct |
39519513 |
T |
|
| Q |
113 |
aaagtatgcatggaaacacataagctgctttggattattattattatatatctattaatagtgattcttatatggctacatattttggaaacattgacaa |
212 |
Q |
| |
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||||| |||||| || || |||||| ||||||||||| | ||||||||||||||||||| || ||| | |||||||||||| |||| ||||| |
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| T |
39519512 |
gaagtacgcatggcaatgcaaaagctgttttggattatttt------atatctattaatagtgattattctatagatacatattttgggaacagggacaa |
39519419 |
T |
|
| Q |
213 |
gatggttgcagctatgagagctttcaaagggttgtaccaaactctatttttgtgtagaagaggatttgctgaatttacctcacaaggt |
300 |
Q |
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||| |||||||| |||||||||||||||||||||||| ||| |||||||| || ||||| ||| |||||||| |||||||||||| |
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| T |
39519418 |
gattgttgcagcaatgagagctttcaaagggttgtacaaaa--ctattttttagtgaaagagaattcgctgaattaacctcacaaggt |
39519333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 152 - 300
Target Start/End: Original strand, 39539383 - 39539529
Alignment:
| Q |
152 |
attattatatatctattaatagtgattcttatatggctacatattttggaaacattgacaagatggttgcagctatgagagctttcaaa-gggttgtacc |
250 |
Q |
| |
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|||||| |||||||||||||||||||| || ||| | |||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
39539383 |
attattttatatctattaatagtgattattctatagatacatattttgggaacactgacaagatggttgcagcaatgagagctttcaaaggggttgtaca |
39539482 |
T |
|
| Q |
251 |
aaactctatttttgtgtagaagaggatttgctgaatttacctcacaaggt |
300 |
Q |
| |
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||| ||||||||| || |||||| |||||||||||| |||||| ||||| |
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| T |
39539483 |
aaa--ctatttttgagt-gaagagaatttgctgaattaacctcataaggt |
39539529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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