View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21028_low_14 (Length: 349)

Name: NF21028_low_14
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21028_low_14
NF21028_low_14
[»] chr5 (1 HSPs)
chr5 (175-331)||(16214843-16214999)
[»] chr6 (2 HSPs)
chr6 (254-331)||(17593492-17593569)
chr6 (254-331)||(17700018-17700095)
[»] chr7 (3 HSPs)
chr7 (224-269)||(625900-625945)
chr7 (187-222)||(625394-625429)
chr7 (177-222)||(625740-625785)
[»] chr2 (1 HSPs)
chr2 (248-321)||(28043386-28043459)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 175 - 331
Target Start/End: Original strand, 16214843 - 16214999
Alignment:
Q  175 tatttcctgtttctcatgattcctcctctatctacaaccaaaactcttctaattttatccttctgctgcactgtatttctatctttaaaaaatactttat 274  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||    
T  16214843 tatttcctctttctcatgattcctcctctatctacaaccaaaactcttctaattttatccttctgttacactatatttctatctttaaaaaatactttat 16214942  T
Q  275 atttttattagtattacgaaccgacatgtaccgaagctctatacccctatgcgtacc 331  Q
    ||||||| |||||||||||||||||  |||||||| ||||||| |||||||||||||    
T  16214943 atttttactagtattacgaaccgacgcgtaccgaaactctatatccctatgcgtacc 16214999  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 17593569 - 17593492
Alignment:
Q  254 tatctttaaaaaatactttatatttttattagtattacgaaccgacatgtaccgaagctctatacccctatgcgtacc 331  Q
    ||||||| | |||||||||| ||||| |||||||||||||| |||| ||||||||| |||||||| ||||| ||||||    
T  17593569 tatctttgacaaatactttacattttcattagtattacgaatcgacgtgtaccgaaactctatactcctatacgtacc 17593492  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 17700095 - 17700018
Alignment:
Q  254 tatctttaaaaaatactttatatttttattagtattacgaaccgacatgtaccgaagctctatacccctatgcgtacc 331  Q
    ||||||| | |||||||||| ||||| | |||||||||||| ||||  |||| ||| |||||||| ||||| ||||||    
T  17700095 tatctttgacaaatactttacattttcactagtattacgaatcgacgcgtactgaaactctatactcctatacgtacc 17700018  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 625900 - 625945
Alignment:
Q  224 taattttatccttctgctgcactgtatttctatctttaaaaaatac 269  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||    
T  625900 taattttatccttctgctacactatatttctatctttaaaaaatac 625945  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 222
Target Start/End: Original strand, 625394 - 625429
Alignment:
Q  187 ctcatgattcctcctctatctacaaccaaaactctt 222  Q
    |||||||||||||||||||| |||||||||||||||    
T  625394 ctcatgattcctcctctatccacaaccaaaactctt 625429  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 625740 - 625785
Alignment:
Q  177 tttcctgtttctcatgattcctcctctatctacaaccaaaactctt 222  Q
    ||||||| ||||||||||||||||| |||| ||| |||||||||||    
T  625740 tttcctgcttctcatgattcctcctatatccacatccaaaactctt 625785  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 28043386 - 28043459
Alignment:
Q  248 tatttctatctttaaaaaatactttatatttttattagtattacgaaccgacatgtaccgaagctctatacccc 321  Q
    ||||||||||||| | ||||| |||||||||| |  |||||||||||||||    | |||||||||||||||||    
T  28043386 tatttctatctttgacaaatattttatattttcacaagtattacgaaccgatgcatgccgaagctctatacccc 28043459  T

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