View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_low_15 (Length: 331)
Name: NF21028_low_15
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 175 - 314
Target Start/End: Original strand, 35601553 - 35601693
Alignment:
| Q |
175 |
agctataaatttacaatcggtttcgaacaaa-cagcatgcattccgttccatatgaccactttgatatattcaagcaagctaatggctttaccttttaat |
273 |
Q |
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| T |
35601553 |
agctataaatttacaatcgttttcgaacaaaacagcatgtattctgttccatatgaccactttgatatattcaagcaagctaatggctttaccttttaat |
35601652 |
T |
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| Q |
274 |
tctaaaatggtggaagggaagtgcatatataatttgatttg |
314 |
Q |
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| T |
35601653 |
gctaaaatggtggaagggaagtgcatatataatttgatttg |
35601693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 175 - 314
Target Start/End: Complemental strand, 35639461 - 35639321
Alignment:
| Q |
175 |
agctataaatttacaatcggtttcgaacaaa-cagcatgcattccgttccatatgaccactttgatatattcaagcaagctaatggctttaccttttaat |
273 |
Q |
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| T |
35639461 |
agctataaatttacaatcgttttcgaacaaaacagcatgtattctgttccatatgatcactttgatatattcaagcaagctaatggctttaccttttaat |
35639362 |
T |
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| Q |
274 |
tctaaaatggtggaagggaagtgcatatataatttgatttg |
314 |
Q |
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| T |
35639361 |
gctaaaatggtggaagggaagtgcatatataatttgatttg |
35639321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 35639614 - 35639558
Alignment:
| Q |
14 |
atatgggggctatgatcacataaagagagtttagcaatacaatgagttattttattt |
70 |
Q |
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| T |
35639614 |
atatgggggctatgatcacataaagagaatttagcaatacaatgagttattttattt |
35639558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 35601498 - 35601531
Alignment:
| Q |
159 |
ataaggcaagagtattagctataaatttacaatc |
192 |
Q |
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| T |
35601498 |
ataaggcaagagtattagctataaatttacaatc |
35601531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 35639514 - 35639481
Alignment:
| Q |
159 |
ataaggcaagagtattagctataaatttacaatc |
192 |
Q |
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| T |
35639514 |
ataaggcaagagtattagctataaatttacaatc |
35639481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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