View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21028_low_18 (Length: 303)

Name: NF21028_low_18
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21028_low_18
NF21028_low_18
[»] chr5 (2 HSPs)
chr5 (112-303)||(10521363-10521554)
chr5 (226-303)||(35854604-35854681)
[»] chr4 (6 HSPs)
chr4 (230-303)||(54304286-54304359)
chr4 (197-303)||(55705943-55706049)
chr4 (226-303)||(45876742-45876819)
chr4 (226-303)||(47293518-47293595)
chr4 (232-299)||(45858817-45858884)
chr4 (232-303)||(56208543-56208614)
[»] chr8 (2 HSPs)
chr8 (201-303)||(7972057-7972159)
chr8 (203-301)||(7961689-7961787)
[»] chr2 (1 HSPs)
chr2 (232-303)||(24357517-24357588)


Alignment Details
Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 112 - 303
Target Start/End: Complemental strand, 10521554 - 10521363
Alignment:
Q  112 gtcctccagtagtttattaagtgattggtgatcttcaacaaaagcatagccaatacctcttgaaagcatgagtagagtaggaccggatcatgagagctcc 211  Q
    |||||| ||||||| ||||||| || || ||||  |||| |  ||||| ||||| || ||| |||| ||| |||||| ||||||||||| |||||||||     
T  10521554 gtcctctagtagttgattaagtaatcggggatcaccaacgagtgcataaccaatgccccttaaaagtatgcgtagagaaggaccggatcttgagagctcg 10521455  T
Q  212 acaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaacc 303  Q
    |||| |  ||| | | |||||||||||||||||||||| |||||||| |||||||| ||||  |||||||||||||||||||||||||||||    
T  10521454 acaagattaacctgtttgttttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaacc 10521363  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 35854681 - 35854604
Alignment:
Q  226 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaacc 303  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  35854681 tctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaacc 35854604  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 54304359 - 54304286
Alignment:
Q  230 ttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaacc 303  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||    
T  54304359 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaacc 54304286  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 197 - 303
Target Start/End: Complemental strand, 55706049 - 55705943
Alignment:
Q  197 gatcatgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaa 296  Q
    |||| |||||||||||||| |  ||| | |||||||||||||||||| || ||||||||||  |||||||| ||||  ||||||||||||||||||||||    
T  55706049 gatcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaa 55705950  T
Q  297 ccaaacc 303  Q
    |||||||    
T  55705949 ccaaacc 55705943  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 45876742 - 45876819
Alignment:
Q  226 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaacc 303  Q
    ||||| |||||||||||| || |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  45876742 tctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaacc 45876819  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 47293595 - 47293518
Alignment:
Q  226 tctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaacc 303  Q
    |||||||||||||||||||||||||||||||||||||||||| || |  ||||  |||||||||||||||||||||||    
T  47293595 tctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaacc 47293518  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 299
Target Start/End: Original strand, 45858817 - 45858884
Alignment:
Q  232 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaacca 299  Q
    |||||||||||||||||||||||| ||||||||||| ||||  |||| ||||||||||||||||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaacca 45858884  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 56208543 - 56208614
Alignment:
Q  232 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaacc 303  Q
    ||||||||||   ||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  56208543 ttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaacc 56208614  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 7972057 - 7972159
Alignment:
Q  201 atgagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaa 300  Q
    |||||||||||||||||  ||| | |||||||||||| | ||||||||||||||||||||||||||| ||||  ||||  ||||  |||||||| |||||    
T  7972057 atgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaa 7972156  T
Q  301 acc 303  Q
    |||    
T  7972157 acc 7972159  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 301
Target Start/End: Original strand, 7961689 - 7961787
Alignment:
Q  203 gagagctccacaataccaacttttctgttttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaa 301  Q
    |||| ||||||||||  ||| | | |||||||||| ||||||||||||||||||||||||||||| ||    ||||| |||||||||||||| ||||||    
T  7961689 gagaactccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaa 7961787  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 24357588 - 24357517
Alignment:
Q  232 ttgaggtatattggccttcaattttgctatagcaatcgcacaagatatcccaccaatagcatcaaccaaacc 303  Q
    |||||||||||||||||||||||||||||| ||||| || |  || |  |||||||||||||||||||||||    
T  24357588 ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaacc 24357517  T

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