View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_low_19 (Length: 298)
Name: NF21028_low_19
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 34868539 - 34868276
Alignment:
| Q |
18 |
catctccttcttgttgttgtatccttcaacctttaatgttttagaggttgcagcagttgacaagct-atattacatctctatgaaactgaaattatgaga |
116 |
Q |
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| T |
34868539 |
catctccttcttgttgttgtatccttcaacctttaatgttttagaggttgcagcagttgacaagcttatattacatctctatgaaactgaaattatgaga |
34868440 |
T |
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| Q |
117 |
gcatccagacatccaatggtttcaaacaaatccaaacaattgcatatatcaaaaatagaacatgtaagacaccgatgcatttgggtttctttatgatttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34868439 |
acatccagacatccaatggtttcaaacaaatccaaacaattgcatatatcaaaaatagaacatgtaagacaccgatgcatttgggtttctttatgatttt |
34868340 |
T |
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| Q |
217 |
gatgatcttggcaacttggacagatagtaatcacttattgtcaaatttgtaaaccaagtttctt |
280 |
Q |
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| T |
34868339 |
gatgatcttggcaacttggacagatagtaatcacttattgtcaaatttgtaaaccaagtttctt |
34868276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 34875782 - 34875525
Alignment:
| Q |
18 |
catctccttcttgttgttgtatccttcaacctttaatgttttagaggttgcagcagttgacaag-ctatattacatctctatgaaactgaaattatgaga |
116 |
Q |
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| T |
34875782 |
catctccttccttttcctgtatcctgcaacctttaatcttttagaggttgcagcagttgacaagcctaagttacatctctatgaaactggaattatgaga |
34875683 |
T |
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| Q |
117 |
gcatccagacatccaatggtttcaaacaaatccaaacaattgcatatatcaaaaatagaacatgtaagacaccgatgcatttgggtttctttatgatttt |
216 |
Q |
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| T |
34875682 |
ataaccaggcatccacaggtat-actcaaatccaaataattgcatagatcaaaaa---ataaagtaagacactgatgaatttggggct-tttatgatttt |
34875588 |
T |
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| Q |
217 |
gatgatcttggcaacttggacagatagtaatcacttattgtcaaatttgtaaaccaagtttct |
279 |
Q |
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| T |
34875587 |
gatgatcatggtaacttggacaagtagtaatcacatattgtcaactttgtgaatcaaggttct |
34875525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 34871788 - 34871717
Alignment:
| Q |
210 |
tgattttgatgatcttggcaacttggacagatagtaatcacttattgtcaaatttgtaaaccaagtttcttt |
281 |
Q |
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| T |
34871788 |
tgattttgatgatcttggtaacttggacaaatagtaatcagatattatcaaatttgtacatcaagtgtcttt |
34871717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 38381529 - 38381598
Alignment:
| Q |
37 |
tatccttcaacctttaatgttttagaggttgcagcagttgacaag-ctatattacatctctatgaaactg |
105 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||| ||| | ||||||| |||||||||| |
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| T |
38381529 |
tatccttcaacctttaatcttttagaaattgcagcagttgacaagcctaaaatacatctatatgaaactg |
38381598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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