View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_low_2 (Length: 567)
Name: NF21028_low_2
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 57 - 501
Target Start/End: Complemental strand, 39385597 - 39385141
Alignment:
| Q |
57 |
taaatgttgtttcattcacatttttctctaattggacttcatgttattgtcttcgcaaatgattgatggtagtagtannnnnnngtatgtaaccactaat |
156 |
Q |
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|||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39385597 |
taaaggttatttcattcacatttttctcgaattggacttcatgttattgtcttcgcaaatgattgatggtagtagtacttttttgtatgtaaccactaat |
39385498 |
T |
|
| Q |
157 |
ttaattgaccatctttgataaactctctcctcttcttaaccatttcttcatatgtaatacacacaccccgttctgctattgcttgatgttgatataaata |
256 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39385497 |
ttaattgaccatctttgataaactctctcctctt---aaccatttcttcatatgtaatacac----cccgttctgctattgcttgatgttgatataaata |
39385405 |
T |
|
| Q |
257 |
atgacaccaagcaagcattgctgcattg--------------------tttgttccctttgaccaagaatattctctgtattgttttagtttattatagc |
336 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39385404 |
atgacaccaagcaagaattgctgcattggcatcaaagttacaaatttatttgttccctttgaccaagaatattctctgtattgttttagtttattatagc |
39385305 |
T |
|
| Q |
337 |
tattgatttgattcgtactaattaaattaataacatcattcatctcttgttttgtatggctggccacaactattgcaactgaagcagatttacacctgtc |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39385304 |
tattgatttgattcgtactaattaaattaataacatcattcttctcttgttttg-atggctggccacaactattgcaactgaagcagatttacacctgtc |
39385206 |
T |
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| Q |
437 |
ttctttatgtgctgccctgaaagagacctccactgcattaatcattagcacacggctaagccttc |
501 |
Q |
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| T |
39385205 |
ttctttatgtgctgccctgaaagagacctccactgcattaatcattagcacacggctaagccttc |
39385141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 507 - 556
Target Start/End: Complemental strand, 39384711 - 39384662
Alignment:
| Q |
507 |
ttttctatattaagcaatatccccattactagcactaattttattttcat |
556 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39384711 |
ttttatatattaagcaatgtccccattactagcactaattttattttcat |
39384662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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