View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21028_low_22 (Length: 274)

Name: NF21028_low_22
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21028_low_22
NF21028_low_22
[»] chr5 (2 HSPs)
chr5 (1-266)||(1759301-1759557)
chr5 (74-134)||(1754206-1754265)
[»] chr4 (25 HSPs)
chr4 (1-141)||(27505659-27505789)
chr4 (1-141)||(27479954-27480084)
chr4 (4-140)||(27516567-27516693)
chr4 (1-141)||(27526069-27526199)
chr4 (1-141)||(27523360-27523490)
chr4 (4-140)||(27473948-27474074)
chr4 (1-143)||(27513731-27513863)
chr4 (13-141)||(27502092-27502210)
chr4 (1-163)||(27487036-27487188)
chr4 (4-141)||(27460534-27460661)
chr4 (70-128)||(27444764-27444822)
chr4 (70-140)||(27466933-27467003)
chr4 (4-141)||(27469516-27469643)
chr4 (70-139)||(27567367-27567436)
chr4 (70-126)||(27557601-27557657)
chr4 (70-141)||(27476799-27476870)
chr4 (167-225)||(27474102-27474160)
chr4 (70-128)||(27498527-27498585)
chr4 (32-127)||(27501397-27501486)
chr4 (77-128)||(27431118-27431169)
chr4 (70-141)||(27500295-27500366)
chr4 (172-238)||(27469688-27469754)
chr4 (70-128)||(27554421-27554479)
chr4 (70-105)||(27495648-27495683)
chr4 (70-134)||(27507777-27507841)
[»] chr3 (3 HSPs)
chr3 (70-128)||(50904762-50904820)
chr3 (70-132)||(38028732-38028794)
chr3 (70-132)||(38040047-38040109)
[»] chr8 (1 HSPs)
chr8 (70-132)||(21604720-21604782)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 1759301 - 1759557
Alignment:
Q  1 aaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcaga 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||    
T  1759301 aaccaaacatcattccaagaattgttgagccaagcaagctgaggaacaatttgaatacaaccatccaat------gggtggtctcaccattctttgcaga 1759394  T
Q  101 gaagacgttttcttagatatcacttctcacttgaattgaatcagcagctctctgaagatatcaaaagaccaatttttgtacaactttagtttcttacctt 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  1759395 gaagaagttttcttagatatcacttctcacttgaattgaatcagc---tctctgaaaatatcaaaagaccaatttttgtagaactttagtttcttacctt 1759491  T
Q  201 caaaagatttttacttttcttgttacttgaatgtaaaacttcatatttctataattcttctctgat 266  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1759492 caaaagatttttacttttcttgttacttggatgtaaaacttcatatttctataattcttctctgat 1759557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 1754265 - 1754206
Alignment:
Q  74 atgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttga 134  Q
    |||||||||||||| |||| ||| |||||| || ||||||||||||||||||||| |||||    
T  1754265 atgggtggtctcactattccttgtagagaa-accttttcttagatatcacttctcgcttga 1754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 27505789 - 27505659
Alignment:
Q  1 aaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcaga 100  Q
    |||||||| |||||||||||||||||||    |||||||||||||||||||||||||  ||||||||||      |||||||||||| |||| |||||||    
T  27505789 aaccaaacctcattccaagaattgttga----accaagctgaggaacaatttgaatatgaccatccaat------gggtggtctcactattccttgcaga 27505700  T
Q  101 gaagacgttttcttagatatcacttctcacttgaattgaat 141  Q
    |||||  ||||||||||||||| ||||||||||||||||||    
T  27505699 gaagagattttcttagatatcatttctcacttgaattgaat 27505659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 27479954 - 27480084
Alignment:
Q  1 aaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcaga 100  Q
    |||||||||||||||||| | |||||||    |||||||||||||||||||||||||  | ||||||      ||||||||||||||||||| |||||||    
T  27479954 aaccaaacatcattccaaaagttgttga----accaagctgaggaacaatttgaatatgatcatcca------atgggtggtctcaccattccttgcaga 27480043  T
Q  101 gaagacgttttcttagatatcacttctcacttgaattgaat 141  Q
    |||||| ||||||||||||| | ||||||||||||||||||    
T  27480044 gaagacattttcttagatattaattctcacttgaattgaat 27480084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 27516693 - 27516567
Alignment:
Q  4 caaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcagagaa 103  Q
    |||| ||||||||||||||||||||    |||||||||||||||||||||||||  ||||||||||      ||| |||||||| |||| ||||| ||||    
T  27516693 caaaaatcattccaagaattgttga----accaagctgaggaacaatttgaatatgaccatccaat------ggggggtctcactattccttgcaaagaa 27516604  T
Q  104 gacgttttcttagatatcacttctcacttgaattgaa 140  Q
    || ||||||||||||||||||||| ||||||||||||    
T  27516603 gaagttttcttagatatcacttctaacttgaattgaa 27516567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 27526199 - 27526069
Alignment:
Q  1 aaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcaga 100  Q
    |||||||| ||||||||||||||||||||||||    ||||||||||||||||||||  | |||||||       |||||||||||| |||| |||||||    
T  27526199 aaccaaacctcattccaagaattgttgagccaa----gctgaggaacaatttgaatatgatcatccaac------gggtggtctcactattccttgcaga 27526110  T
Q  101 gaagacgttttcttagatatcacttctcacttgaattgaat 141  Q
    ||||||||||||||||| ||||||||||  |||||||||||    
T  27526109 gaagacgttttcttagagatcacttctcgtttgaattgaat 27526069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 27523490 - 27523360
Alignment:
Q  1 aaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcaga 100  Q
    |||||||| ||||||||||||||||||||| ||    || |||||||||||||||||  ||||||||||      ||||||||| || |||| ||||| |    
T  27523490 aaccaaacttcattccaagaattgttgagcgaa----gccgaggaacaatttgaatatgaccatccaat------gggtggtctaactattccttgcaaa 27523401  T
Q  101 gaagacgttttcttagatatcacttctcacttgaattgaat 141  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  27523400 gaagacattttcttagatattacttctcacttgaattgaat 27523360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 27473948 - 27474074
Alignment:
Q  4 caaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcagagaa 103  Q
    |||| |||||||||||||||| ||||||||   || ||||||||||||||||||  | ||||||      ||||||||||||||||||| |||| |||||    
T  27473948 caaaaatcattccaagaattgctgagccaa---ag-tgaggaacaatttgaatatgatcatcca------atgggtggtctcaccattccttgcggagaa 27474037  T
Q  104 gacgttttcttagatatcacttctcacttgaattgaa 140  Q
    |||||||||||||| |||||||||| |||||||||||    
T  27474038 gacgttttcttagacatcacttctcgcttgaattgaa 27474074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 27513863 - 27513731
Alignment:
Q  1 aaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcaga 100  Q
    |||||||| || ||||||||||||||||    |||||||||| ||||||| ||||||  | ||||||||      |||||||||||| |||| |||||||    
T  27513863 aaccaaacctcgttccaagaattgttga----accaagctgaagaacaatatgaatatgatcatccaat------gggtggtctcactattccttgcaga 27513774  T
Q  101 gaagacgttttcttagatatcacttctcacttgaattgaatca 143  Q
    ||||| || ||||||||||||||||||| ||||||||||||||    
T  27513773 gaagaagtattcttagatatcacttctcgcttgaattgaatca 27513731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 27502210 - 27502092
Alignment:
Q  13 ttccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcagagaagacgttttc 112  Q
    ||||||||||||||||    |||||||||||||||||||||||||  | ||||||||      ||||||||| || |||| ||||||||||||| |||||    
T  27502210 ttccaagaattgttga----accaagctgaggaacaatttgaatatgatcatccaat------gggtggtctaactattccttgcagagaagacattttc 27502121  T
Q  113 ttagatatcacttctcacttgaattgaat 141  Q
    ||||||||||| |||||||| ||||||||    
T  27502120 ttagatatcacctctcacttaaattgaat 27502092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 27487036 - 27487188
Alignment:
Q  1 aaccaaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcaga 100  Q
    |||||| |||| || |||||||||||||    |||||||||| ||||||||||||||  | ||||||      ||||||||||| || |||| ||||| |    
T  27487036 aaccaaccatcgtttcaagaattgttga----accaagctgaagaacaatttgaatatgatcatcca------atgggtggtcttactattccttgcaaa 27487125  T
Q  101 gaagacgttttcttagatatcacttctcacttgaattgaatcagcagctctctgaagatatca 163  Q
    |||||| ||||||||||||| |||||||||||||||||||| |  || ||| |||||||||||    
T  27487126 gaagacattttcttagatattacttctcacttgaattgaattattagttctttgaagatatca 27487188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 27460534 - 27460661
Alignment:
Q  4 caaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcagagaa 103  Q
    |||| |||||||||||||||| ||||||||   || ||||||||||||||||||  | ||||||      ||||||||||||||||||| ||||||||||    
T  27460534 caaaaatcattccaagaattgctgagccaa---ag-tgaggaacaatttgaatatgatcatcca------atgggtggtctcaccattccttgcagagaa 27460623  T
Q  104 gacgttttcttagatatcacttctcacttgaattgaat 141  Q
    ||| ||||||| |||||||| |||||||| | ||||||    
T  27460624 gacattttcttggatatcacctctcacttaatttgaat 27460661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 27444822 - 27444764
Alignment:
Q  70 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 128  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  27444822 tccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 27444764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 27466933 - 27467003
Alignment:
Q  70 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaa 140  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||||  |||||||||||    
T  27466933 tccaatgggtggtctcactattccttgcagagaagaagttttcttagacatcacttctagcttgaattgaa 27467003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 27469516 - 27469643
Alignment:
Q  4 caaacatcattccaagaattgttgagccaaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcagagaa 103  Q
    ||||||||||| |||||| |||||||||||    ||||| ||||||||||||||  | ||||||      ||||||||||| || |||| ||||||||||    
T  27469516 caaacatcattacaagaactgttgagccaa----gctgaagaacaatttgaatatgaacatcca------atgggtggtctaactattccttgcagagaa 27469605  T
Q  104 gacgttttcttagatatcacttctcacttgaattgaat 141  Q
    ||  |||||||||||||||| |||||||| ||||||||    
T  27469606 gaaattttcttagatatcacctctcacttcaattgaat 27469643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 27567367 - 27567436
Alignment:
Q  70 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattga 139  Q
    |||||||||||||||||| |||| |||||| ||||| | |||||||||  ||||||||||||||||||||    
T  27567367 tccaatgggtggtctcacaattccttgcagcgaagatgctttcttagaactcacttctcacttgaattga 27567436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 27557601 - 27557657
Alignment:
Q  70 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttc 126  Q
    |||||||||||||||||| ||||  ||||||||||| ||||||||||||||||||||    
T  27557601 tccaatgggtggtctcactattccatgcagagaagatgttttcttagatatcacttc 27557657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 27476799 - 27476870
Alignment:
Q  70 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 141  Q
    ||||||||||||||| || |||| ||||||||||||| ||||||| ||||| || |||||||| ||||||||    
T  27476799 tccaatgggtggtctaactattccttgcagagaagacattttcttggatattacctctcacttaaattgaat 27476870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 27474102 - 27474160
Alignment:
Q  167 gaccaatttttgtacaactttagtttcttaccttcaaaagatttttacttttcttgtta 225  Q
    ||||||||||||||  |||||||||||| |||||||||||||||| |||||| ||||||    
T  27474102 gaccaatttttgtagcactttagtttctaaccttcaaaagattttcacttttgttgtta 27474160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 27498527 - 27498585
Alignment:
Q  70 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 128  Q
    |||||||||||||||||| |||| |||| |||||||| | |||||||||||||||||||    
T  27498527 tccaatgggtggtctcactattccttgcggagaagacatgttcttagatatcacttctc 27498585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 27501397 - 27501486
Alignment:
Q  32 aaccaagctgaggaacaatttgaatacaaccatccaattccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttct 127  Q
    |||||||| |||||||||||||||||| | |||||||       |||||||||||| |||| ||| ||||||||| | ||||||||||||||||||    
T  27501397 aaccaagccgaggaacaatttgaatacgatcatccaac------gggtggtctcactattccttgtagagaagacatgttcttagatatcacttct 27501486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 27431169 - 27431118
Alignment:
Q  77 ggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 128  Q
    ||||||||||| |||| |||||||||||||||||||||| |||| |||||||    
T  27431169 ggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctc 27431118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 27500366 - 27500295
Alignment:
Q  70 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttgaattgaat 141  Q
    ||||||||||||  |||| |||| ||||||||||||| ||||||||||  ||||||||  ||||||||||||    
T  27500366 tccaatgggtggcatcactattccttgcagagaagaccttttcttagaattcacttcttgcttgaattgaat 27500295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 27469688 - 27469754
Alignment:
Q  172 atttttgtacaactttagtttcttaccttcaaaagatttttacttttcttgttacttgaatgtaaaa 238  Q
    |||||||||  ||||||||||| ||||||||||||||||| |||||| |||| | ||| ||||||||    
T  27469688 atttttgtagcactttagtttcataccttcaaaagattttcacttttgttgtaatttggatgtaaaa 27469754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 27554421 - 27554479
Alignment:
Q  70 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 128  Q
    ||||| |||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||    
T  27554421 tccaacgggtagtctcacaattccttgtagagaagacgttttcttagatattacttctc 27554479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 27495648 - 27495683
Alignment:
Q  70 tccaatgggtggtctcaccattctttgcagagaaga 105  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27495648 tccaatgggtggtctcaccattccttgcagagaaga 27495683  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 27507841 - 27507777
Alignment:
Q  70 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcacttga 134  Q
    ||||||||||||||| || |||| |||   ||||||  ||||||||||||||||||||| |||||    
T  27507841 tccaatgggtggtcttacaattccttgtgaagaagatcttttcttagatatcacttctcgcttga 27507777  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 50904820 - 50904762
Alignment:
Q  70 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctc 128  Q
    |||||||||||| |||||||||| |||||||||||| ||||| ||  ||||||||||||    
T  50904820 tccaatgggtggcctcaccattccttgcagagaagaggtttttttgcatatcacttctc 50904762  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 38028794 - 38028732
Alignment:
Q  70 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcactt 132  Q
    ||||||||| || ||||| |||| ||||| |||||||||||||||  |||| |||||||||||    
T  38028794 tccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 38028732  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 38040109 - 38040047
Alignment:
Q  70 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcactt 132  Q
    ||||||||| || ||||| |||| ||||| |||||||||||||||  |||| |||||||||||    
T  38040109 tccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 38040047  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 21604782 - 21604720
Alignment:
Q  70 tccaatgggtggtctcaccattctttgcagagaagacgttttcttagatatcacttctcactt 132  Q
    ||||||||| || ||||| |||| ||||| |||||||||||||||  |||| |||||||||||    
T  21604782 tccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 21604720  T

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