View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_low_24 (Length: 265)
Name: NF21028_low_24
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_24 |
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| [»] scaffold0128 (3 HSPs) |
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Alignment Details
Target: scaffold0128 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 30566 - 30809
Alignment:
| Q |
1 |
tcataatcataccacttttccttttaaaataacacagcataattgattatattatttgttactattcaaatctcgaccaataaatgattacattcaaatt |
100 |
Q |
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| T |
30566 |
tcataatcataccatttttccttttaaaataacacagcataattgattatattatttgttactattcaaatcacgaccaataaatgattacattcaaatt |
30665 |
T |
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| Q |
101 |
gttagatcataatcataacacttttcattttaaaataacacaacattttaccaaaattaaaaatcaccaagaaattgcgcgaaatgattagtaattgaaa |
200 |
Q |
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| T |
30666 |
gttagatcataatcataacacttttcattttaaaataacacaacatattaccaaaattaaaaatcaccaagaaattgcgcaaaatgattagtaattgaaa |
30765 |
T |
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| Q |
201 |
tttcacggaccttgtatcatatgtgtcactcaaatcatcatagccgaat |
249 |
Q |
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| T |
30766 |
tttcactgacctt-----atatgtgtcattcaaatcatcatagccgaat |
30809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 101 - 249
Target Start/End: Original strand, 35874 - 36020
Alignment:
| Q |
101 |
gttagatcataatcataac-acttttcattttaaaataacacaacattttaccaaaattaaaaatcaccaaga--aattgcgcgaaatgattagtaattg |
197 |
Q |
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| T |
35874 |
gttagatcataatgataacgatttttccttttaaaataacagaacattttaccaaaattaaaattcaccaagaataattgcgtgaaatgattagtaattg |
35973 |
T |
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| Q |
198 |
aaatttcacggaccttgtatcatatgtgtcactcaaatcatcatagccgaat |
249 |
Q |
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| T |
35974 |
aaatttcactgacctt-----atatgtgtcattcaaatcatcgtagccgaat |
36020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 30561 - 30601
Alignment:
| Q |
102 |
ttagatcataatcataacacttttcattttaaaataacaca |
142 |
Q |
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| T |
30561 |
ttagatcataatcataccatttttccttttaaaataacaca |
30601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 102 - 249
Target Start/End: Original strand, 13786282 - 13786424
Alignment:
| Q |
102 |
ttagatcataatcataacacttttcattttaaaataacacaacattttaccaaaattaaaaatcaccaagaaattgcgcgaaatgattagtaattgaaat |
201 |
Q |
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| T |
13786282 |
ttagatcataatcataacgttttttccttttaaataacagaaaattttaccaaaattaaaaatcaccaagaaattgcgcaaaatgattactaattgaaat |
13786381 |
T |
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| Q |
202 |
ttcacggaccttgtatcatatgtgtcactcaaatcatcatagccgaat |
249 |
Q |
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| T |
13786382 |
ttcactgacctt-----atatgtgtcattcaaatcatcatagccgaat |
13786424 |
T |
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