View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21028_low_28 (Length: 238)

Name: NF21028_low_28
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21028_low_28
NF21028_low_28
[»] chr8 (2 HSPs)
chr8 (62-238)||(9335575-9335751)
chr8 (35-65)||(9336026-9336056)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 9335751 - 9335575
Alignment:
Q  62 ttgaggatttcattcatcatttatgtttccatatgactgaattgagttactggcccttgtggcaggtttttgcaaaaacccgtacattgtatttcatatt 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  9335751 ttgaggatttcattcatcatttatgtttccatatgactgaattgagttactggcccttgtagcaggtttttgcaaaaacctgtacattgtatttcatatt 9335652  T
Q  162 ggcctctagtgaccgctactgactggatcatttgcatatttaaatcatatggttcatttgatttattttctaatatt 238  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9335651 ggcctctggtgaccgctactgaatggatcatttgcatatttaaatcatatggttcatttgatttattttctaatatt 9335575  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 9336056 - 9336026
Alignment:
Q  35 tatttaacattttttatttgagtgaatttga 65  Q
    |||||||||||||||||||||||||||||||    
T  9336056 tatttaacattttttatttgagtgaatttga 9336026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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