View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_low_29 (Length: 232)
Name: NF21028_low_29
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 11264021 - 11264232
Alignment:
| Q |
16 |
taaagtccatcctccaattcacttcatcattactgaaataaaacccatcttgtgtaaccctccaagaacatatcctatttgtgccacaacgttctgcgtc |
115 |
Q |
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| T |
11264021 |
taaagtccatcctccaattcacttcatcattactgaaataaaatccatcttgtgtaaccctccaagaacatatcctatttgtgccacaacgttctgcgtc |
11264120 |
T |
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| Q |
116 |
cctagaagccttaaacgcatcaaatttcttccttgtgttgtcatatttcatggtacacttcatgtggttgctactccacaaattgggcctcatgatccag |
215 |
Q |
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| T |
11264121 |
cctagaagccttaaacgcatcaaatttcttccttgtgttgtcatatttcatggtacacttcatatggttgctactccacaaattgggcctcatgatccag |
11264220 |
T |
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| Q |
216 |
ctgaaatcatca |
227 |
Q |
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|||||||||||| |
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| T |
11264221 |
ctgaaatcatca |
11264232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 11269375 - 11269575
Alignment:
| Q |
27 |
ctccaattcacttcatcattactgaaataaaacccatcttgtgtaaccctccaagaacatatcctatttgtgccacaacgttctgcgtccctagaagcct |
126 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||| |||||||||||||| |
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| T |
11269375 |
ctccaattcacttcatcattactaaaataaaacccatcttgtgtaaccctccaagaacacaacctatgtaagccacaacgttctatgtccctagaagcct |
11269474 |
T |
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| Q |
127 |
taaacgcatcaaatttcttccttgtgttgtcatatttcatggtacacttcatgtggttgctactccacaaattgggcctcatgatccagctgaaatcatc |
226 |
Q |
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||| |||||||| |||||||| | | || ||||||| ||||||||||| | |||||| ||||| ||||||||||||||| ||||||| || ||||| |
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| T |
11269475 |
caaatgcatcaaaaatcttccttatactatcccatttcattgtacacttcatatagttgctgctccaaaaattgggcctcatggtccagctaaattcatc |
11269574 |
T |
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| Q |
227 |
a |
227 |
Q |
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| T |
11269575 |
a |
11269575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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