View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_low_3 (Length: 553)
Name: NF21028_low_3
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 21 - 543
Target Start/End: Complemental strand, 39578988 - 39578466
Alignment:
| Q |
21 |
ggttgtgataggccaacaatggttgatgtgttgtgggacttggaatatgctttgcagcttcagagagaaccacatgaggatagttctagcagtgcttttg |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39578988 |
ggttgtgataggccaacaatggttgatgtgttgtgggacttggaatatgctttgcagcttcagagagaaccacatgaggatagttctagcagtgcttttg |
39578889 |
T |
|
| Q |
121 |
catcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtggatggcacgtctactgggagggttgatgaatctgaaagtgc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39578888 |
catcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactaaagtggatggcacgtctactgggagggttgatgaatctgaaagtgc |
39578789 |
T |
|
| Q |
221 |
agcgctgacgatgctagacagaatttcatgcgaagaaaatcaagggacaacaatcaacacgcaagtgtctccatgaactgttttgtagatagctcacttc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39578788 |
agcgctgacgatgctagacagaatttcatgcgaagaaaatcaagggacaacaatcaacacgcaagtgtctccatgaactgttttgtagatagctcacttc |
39578689 |
T |
|
| Q |
321 |
tctgttttgtccctgtttcgccccttagttaatggttgttggtctgttctcaattgtaagattaataatggagtaaaacagtattcattttcaagtgatt |
420 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39578688 |
tctgttttgtccctgtttccccccttagttaatggttgttggtctgttctcaattgtaagattaataatggagtaaaacagtattcattttcaagtgatt |
39578589 |
T |
|
| Q |
421 |
atatgaagatctatgtatggtagaatgttgtgattttcttccatgctaaatacaatttcaaatatgtcaaactgtaatttgagtaatcgtacttgtagtg |
520 |
Q |
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| T |
39578588 |
atatgaagatctatgtatggtagaatgttgtgattttcttccatgctaaatacaatttcaaatatgtcaaactgcaatttgagtaatcgtacttgtagtg |
39578489 |
T |
|
| Q |
521 |
tagtataattgttgaatcctatg |
543 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
39578488 |
tagtataattgttgaatcctatg |
39578466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 21 - 339
Target Start/End: Complemental strand, 39542620 - 39542302
Alignment:
| Q |
21 |
ggttgtgataggccaacaatggttgatgtgttgtgggacttggaatatgctttgcagcttcagagagaaccacatgaggatagttctagcagtgcttttg |
120 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
39542620 |
ggttgtgacaggccaacaatggttgatgtgttgtgggacttggaatatgctttgcagctgcagagagaaccacacagggatagttctagcagtgcttttg |
39542521 |
T |
|
| Q |
121 |
catcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtggatggcacgtctactgggagggttgatgaatctgaaagtgc |
220 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39542520 |
cgtcacttcaattgcctaatgttcagcgtttaccttctctgtctgcactgactgaagtggatggcacgtctactgggagggttgatgaatctgaaagtgc |
39542421 |
T |
|
| Q |
221 |
agcgctgacgatgctagacagaatttcatgcgaagaaaatcaagggacaacaatcaacacgcaagtgtctccatgaactgttttgtagatagctcacttc |
320 |
Q |
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|||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| ||||||| | ||| |||| ||| |
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| T |
39542420 |
agcgctgatgatgctagacagaatttcatgcgatgcaaatcaaggtacaacaatcaacacgcaagtgtctccatgagctgttttttcaatacctcatttc |
39542321 |
T |
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| Q |
321 |
tctgttttgtccctgtttc |
339 |
Q |
| |
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|||||||||||| |||||| |
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| T |
39542320 |
tctgttttgtccttgtttc |
39542302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 24 - 293
Target Start/End: Complemental strand, 39574452 - 39574183
Alignment:
| Q |
24 |
tgtgataggccaacaatggttgatgtgttgtgggacttggaatatgctttgcagcttcagagagaaccacatgaggatagttctagcagtgcttttgcat |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39574452 |
tgtgataggccaacaatggttgatgtgttgtgggacttggaatatgctttgcagcttcagagagaaccgcatgaggatagttctagcagtgcttttgcat |
39574353 |
T |
|
| Q |
124 |
cacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtggatggcacgtctactgggagggttgatgaatctgaaagtgcagc |
223 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
39574352 |
cacttcaattgcctaatgttcagcatttaccttctctgtctacaccgactgaagtggatggcacgtctactgggaggattgatgaatctgaaagtgcaac |
39574253 |
T |
|
| Q |
224 |
gctgacgatgctagacagaatttcatgcgaagaaaatcaagggacaacaatcaacacgcaagtgtctcca |
293 |
Q |
| |
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||| ||||||||| ||| |||||||||||| ||||||||| |||||||||||||||||| |||||||| |
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| T |
39574252 |
attgatgatgctagatagactttcatgcgaagcaaatcaaggcacaacaatcaacacgcaaatgtctcca |
39574183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 39516545 - 39516437
Alignment:
| Q |
84 |
agagaaccacatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtggatg |
183 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||| |||||||||||||| |||| ||||| ||||| |
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| T |
39516545 |
agagaacctcatgaggatagttctagcagtgcttctgtatcaattcaattgcctaatgttcgccgtttgccttctctgtctacactgagtgaaggggatg |
39516446 |
T |
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| Q |
184 |
gcacgtcta |
192 |
Q |
| |
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|||||||| |
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| T |
39516445 |
acacgtcta |
39516437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 84 - 183
Target Start/End: Complemental strand, 39509477 - 39509378
Alignment:
| Q |
84 |
agagaaccacatgaggatagttctagcagtgcttttgcatcacttcaattgcctaatgttcagcgtttaccttctctgtctaccctgactgaagtggatg |
183 |
Q |
| |
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|||||||| |||||||||||||||| |||||||| || |||| |||||||||| ||||||| ||||||||||||||| ||| |||| ||||||||||| |
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| T |
39509477 |
agagaacctcatgaggatagttctaacagtgcttctgtatcaattcaattgcccaatgttcgccgtttaccttctctgaatacactgagtgaagtggatg |
39509378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 39509555 - 39509489
Alignment:
| Q |
21 |
ggttgtgataggccaacaatggttgatgtgttgtgggacttggaatatgctttgcagcttcagagag |
87 |
Q |
| |
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|||||||||||||| |||||| |||| ||||||||||||||||| |||||||||||||||||| |
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| T |
39509555 |
ggttgtgataggccttcaatgggaaatgtaatgtgggacttggaatattctttgcagcttcagagag |
39509489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 39516592 - 39516557
Alignment:
| Q |
52 |
tgtgggacttggaatatgctttgcagcttcagagag |
87 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |
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| T |
39516592 |
tgtgggacttggaatattctttgcagcttcagagag |
39516557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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