View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_low_33 (Length: 222)
Name: NF21028_low_33
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_33 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19975401 - 19975180
Alignment:
| Q |
1 |
ggctcttttcttcttagggacatggcctgctgttttgactctgttagaaaggcgaggccgtcttcctcaacatacctacctcgattactcaatcaccaat |
100 |
Q |
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| T |
19975401 |
ggctcttttcttcttagggacatggcctgctgttttgactctgttagaaaggcgaggccgtcttcctcaacatacctacctcgattactcaatcactaat |
19975302 |
T |
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| Q |
101 |
ttcttggctgctattatcattgcttttacatttggtcagatagggaatgggacagttgatgcgccaaatttcttaactcaacttgctcaggttcggttat |
200 |
Q |
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| T |
19975301 |
ttcttggctgctattatcattgcttttacatttggtcagataggaaatgggacagttgatgcgccaaatttcttaactcaacttgctcaggttcggctat |
19975202 |
T |
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| Q |
201 |
tcgttgtattcttcacttgttt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
19975201 |
tcgttgtattcttcacttgttt |
19975180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 19620458 - 19620594
Alignment:
| Q |
8 |
ttcttcttagggacatggcctgctgttttgactctgttagaaaggcgaggccgtcttcctcaacatacctacctcgattactcaatcaccaatttcttgg |
107 |
Q |
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| T |
19620458 |
ttcttcttagggacatggccagctgtgatgactttattggaaaggagaggtcgtcttcctcagcacacctatcttgactacaccatcactaatctcttgg |
19620557 |
T |
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| Q |
108 |
ctgctattatcattgcttttacatttggtcagatagg |
144 |
Q |
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| T |
19620558 |
cggctgttatcattgctttcacctttggtcaaatagg |
19620594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 144
Target Start/End: Original strand, 19977844 - 19977980
Alignment:
| Q |
8 |
ttcttcttagggacatggcctgctgttttgactctgttagaaaggcgaggccgtcttcctcaacatacctacctcgattactcaatcaccaatttcttgg |
107 |
Q |
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| T |
19977844 |
ttctttttggggacatggcctgctgtgatgaatctattggaaaggagaggtcgtcttcctcaacacacctatcttgactacaccattgctaatttcttgg |
19977943 |
T |
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| Q |
108 |
ctgctattatcattgcttttacatttggtcagatagg |
144 |
Q |
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| T |
19977944 |
ctgctgttatcattgctttcacctttggtcaaatagg |
19977980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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