View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_low_4 (Length: 477)
Name: NF21028_low_4
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_4 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 22 - 477
Target Start/End: Original strand, 11859899 - 11860363
Alignment:
| Q |
22 |
tggttttccataaagcgaaaaaagaaagtgaccaccatcagtactgcggtgttgtgaggaacaa---------ctacttatatagaatgaatcggttgat |
112 |
Q |
| |
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||||||||||| ||||| || ||||||||||| ||| | |||||||||||||||||||||||| || ||| ||||||||||||| |||||| |
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| T |
11859899 |
tggttttccatcaagcggaagaagaaagtgactacctccggtactgcggtgttgtgaggaacaatatgaacaactgcttgtatagaatgaatccgttgat |
11859998 |
T |
|
| Q |
113 |
gcataaactcgcaacgcaagaaatcactggtaacgaaaacatcaccatggatgtgatgcgggaaagagttcaagatggaatgctacgagtttcattcgat |
212 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||| |||||| |
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| T |
11859999 |
gcataaactcgcaaggcaagaaatcgctggtaacgaaaacatcaccgtggatgtgatgggggaaagggttcaagatggaatgctgcgagtttcgttcgat |
11860098 |
T |
|
| Q |
213 |
tttgctttagatcttacatgtgagatccctgatttggtgtttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagc |
312 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
11860099 |
tttgctttagatctttcatgtgagatccctgatttggtgtttcagaaagcaaagaaactaaggacctttcttttgccatacaacattaacaaccctcggc |
11860198 |
T |
|
| Q |
313 |
ttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaa |
412 |
Q |
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||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11860199 |
ttccgtacgaggtaaaggtgacaacatcaacttgtgataagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaa |
11860298 |
T |
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| Q |
413 |
gacggttccgagctctattgaggatgtgaagtacttgaggtatctagatctttcccataacaaca |
477 |
Q |
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| T |
11860299 |
gacggttccgagctctattgaggatgtgaagtacttgaggtatctagatctttcccataacaaca |
11860363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 22 - 477
Target Start/End: Original strand, 11827764 - 11828228
Alignment:
| Q |
22 |
tggttttccataaagcgaaaaaagaaagtgaccaccatcagtactgcggtgttgtgaggaacaac---------tacttatatagaatgaatcggttgat |
112 |
Q |
| |
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||||||||||| ||||| || |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
11827764 |
tggttttccatcaagcggaagaagaaagtgaccaccagaagtactgcggtgttgtgaggaacaacatgaacaactacttatatagaatgaatcggttaat |
11827863 |
T |
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| Q |
113 |
gcataaactcgcaacgcaagaaatcactggtaacgaaaacatcaccatggatgtgatgcgggaaagagttcaagatggaatgctacgagtttcattcgat |
212 |
Q |
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|||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||| |||| ||||||| | || | ||| |||||||| ||| || |
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| T |
11827864 |
gcataaactcgcaagacaagaaattgctggtgacgaaaacatcaccgtggatgtgatgggggagagagttcgtggcgggacgctgcgagtttcgttcaat |
11827963 |
T |
|
| Q |
213 |
tttgctttagatcttacatgtgagatccctgatttggtgtttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagc |
312 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11827964 |
tttgctttagatctttcatgtgagatccctgattcggtgtttcagacagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcgtc |
11828063 |
T |
|
| Q |
313 |
ttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaa |
412 |
Q |
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||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
11828064 |
ttccgcacgaggtaaagatgacaacgtcaacttgtgataagatcttcgacaccttcaagtactcgctacgcgtgttggatctacatgacttggggatcaa |
11828163 |
T |
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| Q |
413 |
gacggttccgagctctattgaggatgtgaagtacttgaggtatctagatctttcccataacaaca |
477 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11828164 |
gacagttccaagctctattgaggatgtgaagtacttgaggtatctagatctttcacataacaaca |
11828228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 92 - 477
Target Start/End: Complemental strand, 11902573 - 11902194
Alignment:
| Q |
92 |
atatagaatgaatcggttgatgcataaactcgcaacgcaagaaatcactggtaacgaaaacatcaccatggatgtgatgcgggaaagagttcaagatgga |
191 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| || || |||| || | |||||||| || || || |||| |||| | |||| ||| |||| |
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| T |
11902573 |
atatagaatgaatcggttaatgcataaactcgcaaggctag---tcacctgtgaagaaaacatgactgtgaattcgatgggggataaagttaaaggtgga |
11902477 |
T |
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| Q |
192 |
atgctacgagtttcattcgattttgctttagatcttacatgtgagatccctgatttggtgtttcagaaagcaaagaaactaaggaccattcttttgccat |
291 |
Q |
| |
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||| | |||| |||||| ||||||||||| ||||| |||||| |||||| || ||| |||| | |||||||||||||| || |||||||||||||| | |
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| T |
11902476 |
atgttgcgagcttcatttgattttgctttggatctgtcatgtgggatcccagacttgttgttcgataaagcaaagaaactgagaaccattcttttgccgt |
11902377 |
T |
|
| Q |
292 |
acaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttcgacaccttcaagtgctcgctacgcgtgttgga |
391 |
Q |
| |
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||| || ||||||||||| ||||| || ||||| ||| ||||||||||||| || || ||||||||| ||||||||||| || ||||| ||| |||| |
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| T |
11902376 |
acagcactaacaaccctcgccttccacacgaggtgaagatgacaacatcaacatgcgataagatcttcaacaccttcaag---tccctacgtgtgctgga |
11902280 |
T |
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| Q |
392 |
tctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagtacttgaggtatctagatctttcccataacaaca |
477 |
Q |
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| T |
11902279 |
tctacatgacttggggattaagatggttccaacatctattgaggaggtgaagtacttgaggtatctagatctttctcataacaaca |
11902194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 147 - 477
Target Start/End: Original strand, 12038801 - 12039128
Alignment:
| Q |
147 |
gaaaacatcaccatggatgtgatgcgggaaagagttcaagatggaatgctacgagtttcattcgattttgctttagatcttacatgtgagatccctgatt |
246 |
Q |
| |
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|||||||||||| ||||| |||| |||| | ||||| |||||||||||||||||||| || |||| |||||||||| | |||| |||||| |||| |
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| T |
12038801 |
gaaaacatcaccgtggattcgatgggggagggtgttcacgatggaatgctacgagtttcgtttgattatgctttagatttgttgtgtgggatcccagatt |
12038900 |
T |
|
| Q |
247 |
tggtgtttcagaaagcaaagaaactaaggaccattcttttgccatacaacattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttg |
346 |
Q |
| |
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|||||| ||||||| || ||||| ||||||||||||||||||||||||| | ||||||||| |||||| | |||||| || ||||||||||||| || |
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| T |
12038901 |
gtgtgtttgagaaagctaaaaaactgaggaccattcttttgccatacaacactgacaaccctcggcttcctgacgaggtacagatgacaacatcaacctg |
12039000 |
T |
|
| Q |
347 |
tgaaaagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagtac |
446 |
Q |
| |
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||| |||||||| |||||||||| ||| | |||||||| ||| | ||||| ||||||||||||||| |||||||||||||||| || ||||||||| |
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| T |
12039001 |
tgataagatctttaacaccttcaa-agct--atgcgcgtgttagatatgcatgacttggggatcaagacgattccgagctctattgaagaggtgaagtac |
12039097 |
T |
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| Q |
447 |
ttgaggtatctagatctttcccataacaaca |
477 |
Q |
| |
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| T |
12039098 |
ttgaggtatctagatctttctcataacaaca |
12039128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 174 - 477
Target Start/End: Original strand, 11731708 - 11732008
Alignment:
| Q |
174 |
gaaagagttcaagatggaatgctacgagtttcattcgattttgctttagatcttacatgtgagatccctgatttggtgtttcagaaagcaaagaaactaa |
273 |
Q |
| |
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|||| |||| |||| |||||||| |||| ||| || ||||||| ||| |||||| | |||| ||| || |||| | ||||| | |||||||||||| | |
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| T |
11731708 |
gaaaaagttgaagaaggaatgctgcgagcttcgtttgattttggtttggatctttcgtgtgggattccagattcgatgttt---atagcaaagaaactga |
11731804 |
T |
|
| Q |
274 |
ggaccattcttttgccatacaa---cattaacaaccctcagcttccgcatgaggtaaaggtgacaacatcaacttgtgaaaagatcttcgacaccttcaa |
370 |
Q |
| |
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|||||||| | ||||||||||| |||||||||||||| |||||| || ||||| ||| |||| || |||| ||||| ||||||||| |||||||||| |
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| T |
11731805 |
ggaccattttattgccatacaaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagatcttcaacaccttcaa |
11731904 |
T |
|
| Q |
371 |
gtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagtacttgaggtatctagatctttcccat |
470 |
Q |
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| || | | |||||||||||||||||| ||||||||||||| || || | |||||||||||| |||| |||||||||| ||||||||| ||||| |
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| T |
11731905 |
g---tccatgcacgtgttggatctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaatacttgaggtttctagatctatcccac |
11732001 |
T |
|
| Q |
471 |
aacaaca |
477 |
Q |
| |
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||||||| |
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| T |
11732002 |
aacaaca |
11732008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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