View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21028_low_5 (Length: 468)
Name: NF21028_low_5
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 137 - 417
Target Start/End: Original strand, 1758778 - 1759058
Alignment:
| Q |
137 |
gtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttcagattaatagtttttatgctgaacaattgatt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1758778 |
gtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttcagattaatagtttttatgctgaacaattcatt |
1758877 |
T |
|
| Q |
237 |
tttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgtggc |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1758878 |
tttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatgtccatgtggc |
1758977 |
T |
|
| Q |
337 |
aagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattcct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758978 |
aagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattcct |
1759058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 234 - 417
Target Start/End: Complemental strand, 38867046 - 38866863
Alignment:
| Q |
234 |
atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt |
333 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| |
|
|
| T |
38867046 |
atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaagccttactttcaagtgtccatgt |
38866947 |
T |
|
| Q |
334 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattcct |
417 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||| ||| ||||||||||||| |
|
|
| T |
38866946 |
ggcaagggatatgaggttctaatatgtgcaaacaattgttactacaagttggtctagaagaatcaaaatgtttaattgattcct |
38866863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 201 - 403
Target Start/End: Original strand, 29250415 - 29250617
Alignment:
| Q |
201 |
tttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgat |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
29250415 |
tttcagattaattgtttttatgctgaacaattcatttatgtttttgtaggatgaattgggaaatgattataaagaagctgttagtgtggagtggattgat |
29250514 |
T |
|
| Q |
301 |
aagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagt |
400 |
Q |
| |
|
|||||||| |||||||||||||| | |||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||| || | || |||||||||| |
|
|
| T |
29250515 |
aagtgtttgagccttactttcaagtgtccatgcggcaagggatatgaggttctaatatgtgctaacaattgctactacaagttggtttacaagaatcagt |
29250614 |
T |
|
| Q |
401 |
atg |
403 |
Q |
| |
|
||| |
|
|
| T |
29250615 |
atg |
29250617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 234 - 398
Target Start/End: Original strand, 29426336 - 29426500
Alignment:
| Q |
234 |
atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt |
333 |
Q |
| |
|
|||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||||| |
|
|
| T |
29426336 |
atttatgtttttgtaggatgaatcgggaaatgattatgaagaagctgttagtgtggagtgggttgataagagtttaaaccttactttcaagtgtccatgt |
29426435 |
T |
|
| Q |
334 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatca |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || | || |||||||| |
|
|
| T |
29426436 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtaaaagaatca |
29426500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 229 - 415
Target Start/End: Original strand, 29169362 - 29169548
Alignment:
| Q |
229 |
aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatc |
328 |
Q |
| |
|
|||| |||| || |||||||||||||||||| ||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||| | | |
|
|
| T |
29169362 |
aattcatttatgattttgtaggatgaattgggaaatgattatgaagaagctgtcagtgtagaatggattgataagtgtttaagccttactttcaggtgcc |
29169461 |
T |
|
| Q |
329 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgcttaattgattc |
415 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||| |
|
|
| T |
29169462 |
catgtggcaagggatatgagattctaatatgtgcaaacaattgttactacaagttggtctagaagaatcattatgtttaattgattc |
29169548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 75 - 205
Target Start/End: Original strand, 29250127 - 29250257
Alignment:
| Q |
75 |
atactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatattgaagggtaaaaatgctaaattttaagacaagaacatactgaag |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
29250127 |
atactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatattaaagggtaagattgctaaattttaagacaggaacatactgaag |
29250226 |
T |
|
| Q |
175 |
aatgaagatgacatattcaattatagtttca |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
29250227 |
aatgaagatgacatattcaattatagtttca |
29250257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 229 - 398
Target Start/End: Complemental strand, 29566696 - 29566527
Alignment:
| Q |
229 |
aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatc |
328 |
Q |
| |
|
|||| |||| |||||||| |||||||||||| ||||||||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||| | || |
|
|
| T |
29566696 |
aattcatttatgtttttgcaggatgaattgggaaatgattatgaagaagctgttagtgtagaatggattgatgagtgtttaagccttactttcaagtgtc |
29566597 |
T |
|
| Q |
329 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatca |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || |||||||| |
|
|
| T |
29566596 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtaaaagaatca |
29566527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 229 - 402
Target Start/End: Original strand, 32432111 - 32432284
Alignment:
| Q |
229 |
aattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatc |
328 |
Q |
| |
|
|||| |||||||| ||||||||||| |||| | | ||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||| | | || |
|
|
| T |
32432111 |
aattcatttttgtgtttgtaggatggtttggcagaagattatgaagaagctgttagtgtagagtggattgaaaagtgtttaagccttatttttaggtgtc |
32432210 |
T |
|
| Q |
329 |
catgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtat |
402 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||| || | ||||||||||||||| |
|
|
| T |
32432211 |
catgtggcaaggggtatgaggttctaatatgtgcaaacaattgttactacaagttggtgtagaagaatcagtat |
32432284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 1758714 - 1758781
Alignment:
| Q |
1 |
tgcatgtcttgaatcttcaactgtgattgtctttttcctttggtttttaatttacagaatctatgtaa |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1758714 |
tgcatgtcttgaatcttcaactgtgattgtctttttcctttggtttataatttacagaatctatgtaa |
1758781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 29567281 - 29567215
Alignment:
| Q |
32 |
tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgt |
99 |
Q |
| |
|
|||||||||| ||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29567281 |
tttttccttttgttttta-tttaccggatctaggtaagaataaatactcttcctttcaagaattttgt |
29567215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 410 - 452
Target Start/End: Original strand, 1759281 - 1759323
Alignment:
| Q |
410 |
tgattcctgtatcatatttaaaccaaacatcattccaagaatt |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1759281 |
tgattcctgtatcatatttaaaccaaacatcattccaagaatt |
1759323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 202 - 407
Target Start/End: Original strand, 27463021 - 27463226
Alignment:
| Q |
202 |
ttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgata |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27463021 |
ttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgata |
27463120 |
T |
|
| Q |
302 |
agtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagta |
401 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
27463121 |
agtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagta |
27463220 |
T |
|
| Q |
402 |
tgctta |
407 |
Q |
| |
|
|||||| |
|
|
| T |
27463221 |
tgctta |
27463226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 205 - 407
Target Start/End: Original strand, 27483396 - 27483598
Alignment:
| Q |
205 |
agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27483396 |
agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagt |
27483495 |
T |
|
| Q |
305 |
gtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgc |
404 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
27483496 |
gtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgc |
27483595 |
T |
|
| Q |
405 |
tta |
407 |
Q |
| |
|
||| |
|
|
| T |
27483596 |
tta |
27483598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 199 - 415
Target Start/End: Original strand, 18987740 - 18987956
Alignment:
| Q |
199 |
agtttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18987740 |
agtttcagattaatagtttttatgctgaacaattgttttttgtttttgtaggatcaattgggaaatgattatgaagaagctgttagtgtggagtggattg |
18987839 |
T |
|
| Q |
299 |
ataagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatca |
398 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
18987840 |
ataagtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatca |
18987939 |
T |
|
| Q |
399 |
gtatgcttaattgattc |
415 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
18987940 |
gtatgcttaatagattc |
18987956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 205 - 407
Target Start/End: Original strand, 27471623 - 27471825
Alignment:
| Q |
205 |
agattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27471623 |
agattaatagtttttatgctgaacaattgatttttatttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgataagt |
27471722 |
T |
|
| Q |
305 |
gtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatgc |
404 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
27471723 |
gtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagtatgc |
27471822 |
T |
|
| Q |
405 |
tta |
407 |
Q |
| |
|
||| |
|
|
| T |
27471823 |
tta |
27471825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 201 - 407
Target Start/End: Complemental strand, 27520004 - 27519798
Alignment:
| Q |
201 |
tttcagattaatagtttttatgctgaacaattgatttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27520004 |
tttcagattaatagtttttatgctgaacagttcatttttgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtggagtgggttgat |
27519905 |
T |
|
| Q |
301 |
aagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagt |
400 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
27519904 |
aagtgtttaagccttactttcaagtgtccatgtggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtctagaagaatcagt |
27519805 |
T |
|
| Q |
401 |
atgctta |
407 |
Q |
| |
|
||||||| |
|
|
| T |
27519804 |
atgctta |
27519798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 32 - 205
Target Start/End: Complemental strand, 27520553 - 27520380
Alignment:
| Q |
32 |
tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatatt |
131 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
27520553 |
tttttcctttggtttttaatttaccgaatctaggtaagaataaacactcttcttttcaagaattttgtgggcaatatgttagagttagaggttttatatc |
27520454 |
T |
|
| Q |
132 |
gaagggtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttca |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27520453 |
gaagggtaaaaatgctaaattttaagacaggaacatactgaagaatgaagatgacatattcaattatagtttca |
27520380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 18987200 - 18987369
Alignment:
| Q |
32 |
tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgttagagttagaggctgcatatt |
131 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
18987200 |
tttttcctttggtttttaatttaccgaatctaggtaagaataaatactcttcctttcaagaattttgtgggaagtatgttagagttagaggctgcatatt |
18987299 |
T |
|
| Q |
132 |
gaagggtaaaaatgctaaattttaagacaagaacatactgaagaatgaagatgacatattcaattatagtttca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
18987300 |
gaagggtaaaaatgctaaattttaagacaagaacatactgaa----gaagatgatatattcaattatagtttca |
18987369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 27471494 - 27471573
Alignment:
| Q |
32 |
tttttcctttggtttttaatttacagaatctatgtaagaataaatactcttcctttcaagaattttgtgggcaatatgtt |
111 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27471494 |
tttttcgtttggtttttaatttactgaatctaggtaagaataaatactcttcctttcatgaattttgtgggcaatatgtt |
27471573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 452
Target Start/End: Complemental strand, 27523510 - 27523468
Alignment:
| Q |
410 |
tgattcctgtatcatatttaaaccaaacatcattccaagaatt |
452 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
27523510 |
tgattcctgtatcatatttgaaccaaacttcattccaagaatt |
27523468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 18986655 - 18986687
Alignment:
| Q |
3 |
catgtcttgaatcttcaactgtgattgtctttt |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
18986655 |
catgtcttgaatcttcaactgtgattgtctttt |
18986687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 27520861 - 27520829
Alignment:
| Q |
3 |
catgtcttgaatcttcaactgtgattgtctttt |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27520861 |
catgtcttgaatcttcaactgtgattgtctttt |
27520829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 452
Target Start/End: Complemental strand, 27505809 - 27505767
Alignment:
| Q |
410 |
tgattcctgtatcatatttaaaccaaacatcattccaagaatt |
452 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
27505809 |
tgattcctgtatcatacttgaaccaaacctcattccaagaatt |
27505767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 452
Target Start/End: Complemental strand, 27526219 - 27526177
Alignment:
| Q |
410 |
tgattcctgtatcatatttaaaccaaacatcattccaagaatt |
452 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
27526219 |
tgattcctgtatcatacttgaaccaaacctcattccaagaatt |
27526177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 447
Target Start/End: Original strand, 27479934 - 27479971
Alignment:
| Q |
410 |
tgattcctgtatcatatttaaaccaaacatcattccaa |
447 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| |
|
|
| T |
27479934 |
tgattcctgtatcatacttgaaccaaacatcattccaa |
27479971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 410 - 450
Target Start/End: Original strand, 27476720 - 27476760
Alignment:
| Q |
410 |
tgattcctgtatcatatttaaaccaaacatcattccaagaa |
450 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||||||| |
|
|
| T |
27476720 |
tgattcctgtatcatacttgaaccaaacctcattccaagaa |
27476760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 234 - 403
Target Start/End: Original strand, 25520054 - 25520223
Alignment:
| Q |
234 |
atttttgtttttgtaggatgaattggaaaatgattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgt |
333 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
25520054 |
atttatgtttttgtaggatgaattgggaaatgattatgaagaagctgttagtgtagagtgggttgataagtgtttaagccttactttcaagtgtccatgt |
25520153 |
T |
|
| Q |
334 |
ggcaagggatatgaggttctaatctgtgcaaacaattgttactacaagctgatctagaagaatcagtatg |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |||| |
|
|
| T |
25520154 |
agcaagggatatgaggttctaatctgtgcaaacaattgttactacaagttggtgtagaagaatcactatg |
25520223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 265 - 391
Target Start/End: Complemental strand, 1700074 - 1699948
Alignment:
| Q |
265 |
gattatgaagaagctgttagtgtggagtgggttgataagtgtttaagccttactttcaaatatccatgtggcaagggatatgaggttctaatctgtgcaa |
364 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||| ||| || || |||||||||||||||| | ||||||||||||||| ||||||||||| || | || | |
|
|
| T |
1700074 |
gattttgaagaagctgtgagtgtagagtgggctgaaaaatgcataagccttactttcaagtgtccatgtggcaagggctatgaggttcttatatcagcca |
1699975 |
T |
|
| Q |
365 |
acaattgttactacaagctgatctaga |
391 |
Q |
| |
|
|||||||||| |||||| || |||||| |
|
|
| T |
1699974 |
acaattgttattacaagttggtctaga |
1699948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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