View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21028_low_8 (Length: 429)
Name: NF21028_low_8
Description: NF21028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21028_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 12 - 416
Target Start/End: Complemental strand, 4591185 - 4590784
Alignment:
| Q |
12 |
gaatatccattaatacaggaaggtatctcaaaattcttgaatttgctcaatagatatccacacagataaggagtagacatgtatattatatatgtnnnnn |
111 |
Q |
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| T |
4591185 |
gaatatccattaataccggaaggtacctcaaaattcttgaatttgctcaatagatatccacacagataaggaccagacatgtatatcatatatataaaaa |
4591086 |
T |
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| Q |
112 |
nnnnncaaacacggatatcatactctatgtgtctatgtatattcatttacatccttttttcattgcctattcacttttaccatacgattaacgtcctttg |
211 |
Q |
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| T |
4591085 |
aaa---aaacacggatatcatactctatgtgtctatgtatattcatttacatccttttttcattgcctattcacttttatcatacgattaacgtcctttg |
4590989 |
T |
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| Q |
212 |
aaatgacctgatggtgttggcttcggattgtggagtgtacttctctcaatgtatcatgctcgattctctccagagtcaatttcaatgggctaatctgact |
311 |
Q |
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| T |
4590988 |
aaatgacatgatggtgttggcttcagatcgtggagtgtgcttctctcaatgtatcatgctcgattctctctagagtcaatttcaacgggctaatctgact |
4590889 |
T |
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| Q |
312 |
cttaaataaaagtcctttgtgtccttgttgtttctctgccattggttgtgtctttctcagtatgcgtctctttaagtgatctagatcattttaattgtgc |
411 |
Q |
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| T |
4590888 |
cttaaaaaaaagtcttgtgcgtccttgttgtttctctgccattggttgtgtctttctcagtatgcgtctctttaagtgatctagatccttttaattgtgc |
4590789 |
T |
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| Q |
412 |
ttttt |
416 |
Q |
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| T |
4590788 |
ttttt |
4590784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 275 - 416
Target Start/End: Complemental strand, 4590503 - 4590372
Alignment:
| Q |
275 |
ttctctccagagtcaatttcaatgggctaatctgactcttaaataaaagtcctttgtgtccttgttgtttctctgccattggttgtgtctttctcagtat |
374 |
Q |
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| T |
4590503 |
ttctctccagagccaatttcattgggctaatctgactcttaaa-aaaaatcat-----------tagtttctctaccattggttgtgtctttctcagtat |
4590416 |
T |
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| Q |
375 |
gcgtctctttaa--gtgatctagatcattttaattgtgcttttt |
416 |
Q |
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||||||||||| |||||||||||| ||||||||||| ||||| |
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| T |
4590415 |
tcgtctctttaagtgtgatctagatccttttaattgtgattttt |
4590372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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