View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21029_high_2 (Length: 216)
Name: NF21029_high_2
Description: NF21029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21029_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 64 - 197
Target Start/End: Complemental strand, 30030540 - 30030407
Alignment:
| Q |
64 |
atatttttcttaaattagtagttggaaaagtgaataaaaagatgatgaaattaatataccaaagttcaaaaggatcaataatgttgaattgaatatttat |
163 |
Q |
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| T |
30030540 |
atatttttcttaaattagtagttggaaaagtgaataaaaagatgatgaaattaatataccaaagttcaaaaggatcaataatgttgaattgaatatttat |
30030441 |
T |
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| Q |
164 |
tacaatgaagtaaccctagatttgttgcaggtca |
197 |
Q |
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| T |
30030440 |
tacaatgaagtaaccctagatttgttgcaggtca |
30030407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 30030611 - 30030555
Alignment:
| Q |
16 |
aatatctccacttaatttacccttcaggcccatggttgatagtcccctatatttttc |
72 |
Q |
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| T |
30030611 |
aatatctccacttaatttacccttcaggcccatggttgatagtcccctatatttttc |
30030555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 30040998 - 30040876
Alignment:
| Q |
73 |
ttaaattagtag-ttggaaaagtg--aataaaaagatgatgaaattaatataccaaagttcaaaaggatcaataatgttgaattgaatatttattacaat |
169 |
Q |
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| T |
30040998 |
ttaaattagtaggttggaaaagtgtgagtaaaagggtgataaaattaatataccaaagttaacaaggaataataatgttcaattta-tatatattacaat |
30040900 |
T |
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| Q |
170 |
gaagtaaccctagatttgttgcag |
193 |
Q |
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| T |
30040899 |
gaagtaacccttgatttattgcag |
30040876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 30041079 - 30041024
Alignment:
| Q |
16 |
aatatctccacttaatttacccttcaggcccatggttgatagtcccctatattttt |
71 |
Q |
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| T |
30041079 |
aatatctccacttaattcacccttcaggcccatggttgacaatctcctatattttt |
30041024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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