View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21029_low_1 (Length: 526)

Name: NF21029_low_1
Description: NF21029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21029_low_1
NF21029_low_1
[»] chr6 (17 HSPs)
chr6 (1-318)||(13166605-13166924)
chr6 (436-511)||(13166317-13166392)
chr6 (214-431)||(10740640-10740855)
chr6 (350-432)||(13166503-13166585)
chr6 (329-431)||(18792784-18792885)
chr6 (334-431)||(22868530-22868628)
chr6 (329-431)||(33423916-33424019)
chr6 (202-271)||(9401822-9401891)
chr6 (365-431)||(18984566-18984632)
chr6 (383-431)||(10741840-10741888)
chr6 (383-427)||(9365101-9365145)
chr6 (396-431)||(9290661-9290696)
chr6 (388-427)||(28063007-28063046)
chr6 (326-364)||(9363131-9363169)
chr6 (383-424)||(2979663-2979704)
chr6 (388-425)||(28064662-28064699)
chr6 (367-431)||(21862758-21862822)
[»] chr3 (6 HSPs)
chr3 (328-431)||(18088073-18088176)
chr3 (367-431)||(42531358-42531422)
chr3 (326-428)||(30057157-30057260)
chr3 (368-427)||(814364-814423)
chr3 (378-431)||(42530658-42530710)
chr3 (394-431)||(46691454-46691491)
[»] chr2 (7 HSPs)
chr2 (239-431)||(8985643-8985834)
chr2 (334-431)||(8986996-8987092)
chr2 (204-258)||(30385434-30385488)
chr2 (365-431)||(32291224-32291290)
chr2 (329-363)||(29408982-29409016)
chr2 (373-427)||(42633691-42633745)
chr2 (374-427)||(42631574-42631627)
[»] scaffold0511 (1 HSPs)
scaffold0511 (329-431)||(11256-11357)
[»] chr1 (6 HSPs)
chr1 (329-431)||(28665048-28665149)
chr1 (329-431)||(9168382-9168485)
chr1 (369-431)||(15629325-15629389)
chr1 (333-431)||(6696084-6696181)
chr1 (365-431)||(15630120-15630188)
chr1 (334-428)||(30435678-30435767)
[»] chr4 (9 HSPs)
chr4 (326-431)||(16543429-16543535)
chr4 (329-431)||(16871720-16871821)
chr4 (380-431)||(37945553-37945604)
chr4 (380-431)||(54146682-54146733)
chr4 (201-274)||(24224762-24224836)
chr4 (365-427)||(24226122-24226184)
chr4 (227-318)||(37928129-37928220)
chr4 (380-431)||(54148343-54148393)
chr4 (370-410)||(25186978-25187018)
[»] chr7 (11 HSPs)
chr7 (239-431)||(46964269-46964460)
chr7 (329-431)||(6840546-6840648)
chr7 (333-431)||(46963009-46963106)
chr7 (370-431)||(2628224-2628285)
chr7 (213-272)||(17927761-17927820)
chr7 (369-431)||(15614230-15614292)
chr7 (383-431)||(26403516-26403564)
chr7 (360-427)||(5763704-5763771)
chr7 (195-252)||(21812725-21812782)
chr7 (332-427)||(39349344-39349440)
chr7 (371-431)||(44337416-44337476)
[»] chr8 (5 HSPs)
chr8 (329-427)||(43516198-43516295)
chr8 (365-436)||(43414163-43414234)
chr8 (326-392)||(14699348-14699415)
chr8 (371-431)||(20241094-20241154)
chr8 (371-431)||(20251913-20251973)
[»] chr5 (4 HSPs)
chr5 (326-431)||(24137667-24137773)
chr5 (329-431)||(6643432-6643533)
chr5 (335-431)||(11343870-11343967)
chr5 (237-317)||(11336178-11336258)


Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 13166924 - 13166605
Alignment:
Q  1 acaaagtgaactaatctttcaagtaacaaaagcgacaca--aacaaataccgaaacttgatcaatagccacaaaatacacaatagccacaaagctaaaaa 98  Q
    |||||| |||||||||||||| ||||||||||||| |||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||    
T  13166924 acaaagagaactaatctttcatgtaacaaaagcgatacataaacaaataccgaaacttgatcaataaccacaaaatacacaatagccacaaagcacaaaa 13166825  T
Q  99 cacaaaacttgaccaataccgaagctgtaatttctacttaggacacacaaaacactgaagccacaaagacacttccaaacctgaccaacgaaaatcccaa 198  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13166824 cacaaaacttgaacaataccgaagctgtgatttctacttaggacacacaaaacactgaagccacaaagacacttccaaacctgaccaatgaaaatcccaa 13166725  T
Q  199 aagaccaacactataaattaaaccaaatcaatcacacaacattcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaac 298  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13166724 aagaccaacactataaattaaaccaaatcaatcacacaaaattcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaac 13166625  T
Q  299 gatgctcttgataccatgtt 318  Q
    ||||||||||||||||||||    
T  13166624 gatgctcttgataccatgtt 13166605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 436 - 511
Target Start/End: Complemental strand, 13166392 - 13166317
Alignment:
Q  436 attgatggatgagaatataatatatgaaacaattttaacgtcaaacaacaattttcttgtttcacgtgattaaatc 511  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13166392 attgatggataagaatataatatatgaaacaattttaacgtcaaacaacaattttcttgtttcacgtgattaaatc 13166317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 214 - 431
Target Start/End: Complemental strand, 10740855 - 10740640
Alignment:
Q  214 aattaaaccaaatcaatcacacaacattcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaacgatgctcttgatacc 313  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||  ||||||||||   || ||||| || ||||||||| ||||||||||||||    
T  10740855 aattaaaccaaatcaatcacacaacattcccaaacttttgggaactcaactgcggaagcgacagatcattcaaggaggatcaaaccatgctcttgatacc 10740756  T
Q  314 atgttnnnnnnncaaatacaaaatagagaaagagagaataggaacaacaa-tacggctagggttt-tataaaatatcaatagcttaacattacaaaaggt 411  Q
    |||||       |  |||||||    |||||||||||||| ||| | |||    |||||||||||  ||| |||||||||| ||||| ||||||||| ||    
T  10740755 atgttaacaaaactcatacaaa----agaaagagagaataagaatagcaacggaggctagggtttcaatagaatatcaataacttaatattacaaaatgt 10740660  T
Q  412 tatgagagaatatataataa 431  Q
    ||||||||||||||||||||    
T  10740659 tatgagagaatatataataa 10740640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 350 - 432
Target Start/End: Complemental strand, 13166585 - 13166503
Alignment:
Q  350 aataggaacaacaata-cggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataac 432  Q
    |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  13166585 aataggaacaacaataacggctagggtttcataaaatatcaatggcttaacatta-aaaaggttatgagagaatatataataac 13166503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 329 - 431
Target Start/End: Original strand, 18792784 - 18792885
Alignment:
Q  329 atacaaaatagagaaagagagaataggaacaacaa-tacggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    ||||||||||||||||||||  |||  |||||||| ||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||| |    
T  18792784 atacaaaatagagaaagaga--ataaaaacaacaaatacggctagagtttcataaaatatcaatagtttaacattacaaaaggttataagagaatataca 18792881  T
Q  428 ataa 431  Q
    ||||    
T  18792882 ataa 18792885  T

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Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 334 - 431
Target Start/End: Complemental strand, 22868628 - 22868530
Alignment:
Q  334 aaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||||| ||| ||||||||||||||||  | ||||||||||| ||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  22868628 aaatagagagagaaagaataggaacaacaaagatggctagggtttcatagaatatcaatagcataacattacaaaaagttataagagaatatataataa 22868530  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 329 - 431
Target Start/End: Original strand, 33423916 - 33424019
Alignment:
Q  329 atacaaaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    |||||||||||||||||||||||    ||||| ||  |||||||||||||  || |||| |||||||| ||||||||||| ||||||| |||||||||||    
T  33423916 atacaaaatagagaaagagagaacgataacaataaagacggctagggtttcgtagaataacaatagctcaacattacaaagggttatgggagaatatata 33424015  T
Q  428 ataa 431  Q
    ||||    
T  33424016 ataa 33424019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 9401891 - 9401822
Alignment:
Q  202 accaacactataaattaaaccaaatcaatcacacaacattcccaaatttttgggaacacaaaagcggaag 271  Q
    ||||| |||| |||| |||||||||||||||||||| |||||||||||||||||||| ||| | ||||||    
T  9401891 accaaaactaaaaatcaaaccaaatcaatcacacaatattcccaaatttttgggaactcaacaacggaag 9401822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 431
Target Start/End: Complemental strand, 18984632 - 18984566
Alignment:
Q  365 acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||||||||| |||||||| ||||||| |  |||||| ||||||||| ||||||||||||||||    
T  18984632 acggctagggtttcataaaataacaatagcattgcattactaaaggttataagagaatatataataa 18984566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 10741888 - 10741840
Alignment:
Q  383 aatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  10741888 aatatcaattgcttaatattacaaaatgttatgagagaatatataataa 10741840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 427
Target Start/End: Original strand, 9365101 - 9365145
Alignment:
Q  383 aatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    |||||||||| ||||||||||||||||||||  ||||||||||||    
T  9365101 aatatcaataacttaacattacaaaaggttacaagagaatatata 9365145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 431
Target Start/End: Original strand, 9290661 - 9290696
Alignment:
Q  396 taacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||||||||||||||| ||||||||||||||||    
T  9290661 taacattacaaaaggttataagagaatatataataa 9290696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 427
Target Start/End: Original strand, 28063007 - 28063046
Alignment:
Q  388 caatagcttaacattacaaaaggttatgagagaatatata 427  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  28063007 caatagcttaacattacaaaaggttactagagaatatata 28063046  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 364
Target Start/End: Original strand, 9363131 - 9363169
Alignment:
Q  326 caaatacaaaatagagaaagagagaataggaacaacaat 364  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  9363131 caaatacaaaatcgtgaaagagagaataggaacaacaat 9363169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 424
Target Start/End: Complemental strand, 2979704 - 2979663
Alignment:
Q  383 aatatcaatagcttaacattacaaaaggttatgagagaatat 424  Q
    ||||||||||||||||||||||||||| |||  |||||||||    
T  2979704 aatatcaatagcttaacattacaaaagattacaagagaatat 2979663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 425
Target Start/End: Original strand, 28064662 - 28064699
Alignment:
Q  388 caatagcttaacattacaaaaggttatgagagaatata 425  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  28064662 caatagcttaacattacaaaaggttactagagaatata 28064699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 21862822 - 21862758
Alignment:
Q  367 ggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||||||| ||| |||| |||| |||||| ||||||||  ||||  ||||||||||||||||    
T  21862822 ggctagggtttcatagaataacaattgcttaatattacaaagagttactagagaatatataataa 21862758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 328 - 431
Target Start/End: Original strand, 18088073 - 18088176
Alignment:
Q  328 aatacaaaatagagaaagagagaataggaacaacaatacggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||||| ||| ||| ||||||||||   ||||||||| ||||||||||||||||||    
T  18088073 aatacaaaatagagaaagagagaatagggaaaacaaaacggctagggtttcatagaatgtcaatagcttgctattacaaaatgttatgagagaatatata 18088172  T
Q  428 ataa 431  Q
    ||||    
T  18088173 ataa 18088176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 42531422 - 42531358
Alignment:
Q  367 ggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  42531422 ggctagggtttcatacaatatcaatggcttaacattacaaaaggttataagagaatatataataa 42531358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 428
Target Start/End: Complemental strand, 30057260 - 30057157
Alignment:
Q  326 caaatacaaaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatat 424  Q
    ||||||||||||||||||  |||||||| |||||||||  ||| ||||| ||| | | || |||||||||||||||||||||||| |||| |||||||||    
T  30057260 caaatacaaaatagagaacaagagaatatgaacaacaaagacgactaggatttcagagaacatcaatagcttaacattacaaaagattataagagaatat 30057161  T
Q  425 ataa 428  Q
    ||||    
T  30057160 ataa 30057157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 427
Target Start/End: Original strand, 814364 - 814423
Alignment:
Q  368 gctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    ||||| |||| ||| |||| ||||||||||||||||||| ||||||| ||||||||||||    
T  814364 gctagagtttcatagaataccaatagcttaacattacaagaggttataagagaatatata 814423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 431
Target Start/End: Complemental strand, 42530710 - 42530658
Alignment:
Q  378 tataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    |||| ||||||||| ||||||||||||||| |||||| ||||||||||||||||    
T  42530710 tatataatatcaatggcttaacattacaaa-ggttataagagaatatataataa 42530658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 394 - 431
Target Start/End: Original strand, 46691454 - 46691491
Alignment:
Q  394 cttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  46691454 cttaacattacaaaaggttataagagaatatataataa 46691491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 239 - 431
Target Start/End: Complemental strand, 8985834 - 8985643
Alignment:
Q  239 attcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaacgatgctcttgataccatgttnnnnnnncaaatacaaaata 338  Q
    ||||||||| |||||||||| ||| |||||||||||  | ||| ||| || || |||||| | |||||||||||||||||       || ||| |||||     
T  8985834 attcccaaacttttgggaactcaacagcggaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatataaaatg 8985735  T
Q  339 gagaaagagagaataggaacaacaatacggctagggtttta-taaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    |||||||||||||||||||||||   ||||||| | ||| | || | || ||||||||||||||||||||||||||| ||||||||||||||||    
T  8985734 gagaaagagagaataggaacaac--gacggctacgatttcattagactaacaatagcttaacattacaaaaggttataagagaatatataataa 8985643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 334 - 431
Target Start/End: Complemental strand, 8987092 - 8986996
Alignment:
Q  334 aaatagagaaagagagaataggaacaacaatacggctagggttttataaaa-tatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    |||| ||||||||||||||||||||||| |  |||||| | ||| || | | || ||||||||||||||||||||||||||| ||||||||||||||||    
T  8987092 aaatggagaaagagagaataggaacaacga--cggctacgatttcattagactaacaatagcttaacattacaaaaggttataagagaatatataataa 8986996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 30385488 - 30385434
Alignment:
Q  204 caacactataaattaaaccaaatcaatcacacaacattcccaaatttttgggaac 258  Q
    |||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||    
T  30385488 caacactacaaattaaaccaagtcaatcacacaacattgccaaaattttgggaac 30385434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 431
Target Start/End: Complemental strand, 32291290 - 32291224
Alignment:
Q  365 acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||| ||||| ||| ||||||||| ||||  |||||||||||||||| ||||||||||||||||    
T  32291290 acggctatggtttcatagaatatcaattgcttttcattacaaaaggttataagagaatatataataa 32291224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 363
Target Start/End: Original strand, 29408982 - 29409016
Alignment:
Q  329 atacaaaatagagaaagagagaataggaacaacaa 363  Q
    ||||||||||||||||||||||||| |||||||||    
T  29408982 atacaaaatagagaaagagagaataagaacaacaa 29409016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 42633691 - 42633745
Alignment:
Q  373 ggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    ||||| ||| ||||||||| ||||||||||||||||| |||  ||||||||||||    
T  42633691 ggtttcatagaatatcaattgcttaacattacaaaagattactagagaatatata 42633745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 427
Target Start/End: Original strand, 42631574 - 42631627
Alignment:
Q  374 gttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    |||| ||| ||||||||| | ||||||||| |||||||||| ||||||||||||    
T  42631574 gtttcatagaatatcaattgtttaacattataaaaggttattagagaatatata 42631627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 329 - 431
Target Start/End: Complemental strand, 11357 - 11256
Alignment:
Q  329 atacaaaatagagaaagagagaataggaacaacaa-tacggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    ||||||||||||||||||||  |||  |||||||| ||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||| |    
T  11357 atacaaaatagagaaagaga--ataaaaacaacaaatacggctagagtttcataaaatatcaatagtttaacattacaaaaggttataagagaatataca 11260  T
Q  428 ataa 431  Q
    ||||    
T  11259 ataa 11256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 329 - 431
Target Start/End: Complemental strand, 28665149 - 28665048
Alignment:
Q  329 atacaaaatagagaaagagagaataggaacaacaatacggctagggttttataa-aatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    ||||||||| ||||||||||||||||||||||| |  |||||||||||| || | |||| ||||||||||| ||||||||| ||||||||||||||||||    
T  28665149 atacaaaatggagaaagagagaataggaacaacga--cggctagggtttcattagaataacaatagcttaatattacaaaatgttatgagagaatatata 28665052  T
Q  428 ataa 431  Q
    ||||    
T  28665051 ataa 28665048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 329 - 431
Target Start/End: Original strand, 9168382 - 9168485
Alignment:
Q  329 atacaaaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    ||||||||||||||||||||||||| || ||||||  ||||||||||||| |||||||||||||| ||| | || |||||| ||||| ||||||||||||    
T  9168382 atacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatata 9168481  T
Q  428 ataa 431  Q
    ||||    
T  9168482 ataa 9168485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 431
Target Start/End: Original strand, 15629325 - 15629389
Alignment:
Q  369 ctagggttttataaaatat--caatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||||| |||||||||  ||||||||||| ||||||||||||||| ||||||||||||||||    
T  15629325 ctagggtttcataaaatatttcaatagcttaatattacaaaaggttataagagaatatataataa 15629389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 333 - 431
Target Start/End: Complemental strand, 6696181 - 6696084
Alignment:
Q  333 aaaatagagaaagagagaataggaacaacaatacggctagggttttataaaa-tatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||| ||||||||||||||||||||||| |  |||||| | ||| || | | || ||||||||||||||||||||||||||| ||||||||| ||||||    
T  6696181 aaaatggagaaagagagaataggaacaacga--cggctacgatttcattagactaacaatagcttaacattacaaaaggttataagagaatatttaataa 6696084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 431
Target Start/End: Original strand, 15630120 - 15630188
Alignment:
Q  365 acggctagggttttataaaatat--caatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||||||||| |||||||||  ||||| ||||| ||| ||||||||||| ||||||||||||||||    
T  15630120 acggctagggtttcataaaatatttcaataacttaatattccaaaaggttataagagaatatataataa 15630188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 428
Target Start/End: Complemental strand, 30435767 - 30435678
Alignment:
Q  334 aaatagagaaagagagaataggaacaacaatacggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataa 428  Q
    |||||||||||||||||||||||     || ||||||||||||| ||| |||  | ||||||| | |||||||||||||| ||||  ||||||||    
T  30435767 aaatagagaaagagagaatagga-----aaaacggctagggtttaatagaattacgatagcttgatattacaaaaggttacgagaatatatataa 30435678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 326 - 431
Target Start/End: Complemental strand, 16543535 - 16543429
Alignment:
Q  326 caaatacaaaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatat 424  Q
    |||||||||| |||||||||||| |||| |||||||||  ||||||||||||| ||| |||||||||| ||||||||| ||||||||||   ||||||||    
T  16543535 caaatacaaattagagaaagagacaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatat 16543436  T
Q  425 ataataa 431  Q
    |||||||    
T  16543435 ataataa 16543429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 431
Target Start/End: Complemental strand, 16871821 - 16871720
Alignment:
Q  329 atacaaaatagagaaagagagaataggaacaacaatacggctagggttttataaaa-tatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    ||||||||| ||||||||||||| | ||||||| |  |||||||||||| || | | || ||||||||||||||||||||||||||| ||| ||||||||    
T  16871821 atacaaaatggagaaagagagaacaagaacaacga--cggctagggtttcattagactaacaatagcttaacattacaaaaggttataagataatatata 16871724  T
Q  428 ataa 431  Q
    ||||    
T  16871723 ataa 16871720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 431
Target Start/End: Complemental strand, 37945604 - 37945553
Alignment:
Q  380 taaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||||||||    
T  37945604 taaaatatcaattgattaacattacaaaaggttataagagaatatataataa 37945553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 431
Target Start/End: Complemental strand, 54146733 - 54146682
Alignment:
Q  380 taaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| ||||    
T  54146733 taaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataa 54146682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 274
Target Start/End: Complemental strand, 24224836 - 24224762
Alignment:
Q  201 gaccaacactataaattaaaccaaatcaatcacacaacattcc-caaatttttgggaacacaaaagcggaagcga 274  Q
    |||||||| || |||||||||||||||||||||||||||||||  ||| |||||||||| ||| |||| ||||||    
T  24224836 gaccaacattaaaaattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaatagcgaaagcga 24224762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 427
Target Start/End: Complemental strand, 24226184 - 24226122
Alignment:
Q  365 acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    |||| ||| |||||||| |||| |||||| |||||||||||||||||||| ||||||||||||    
T  24226184 acggatagagttttatagaataccaatagtttaacattacaaaaggttattagagaatatata 24226122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 318
Target Start/End: Complemental strand, 37928220 - 37928129
Alignment:
Q  227 caatcacacaacattcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaacgatgctcttgataccatgtt 318  Q
    |||||||||| || |||||||||||||||||| |||  ||| ||||||  ||| ||||  |||||||||||  | ||||| |||||||||||    
T  37928220 caatcacacatcaatcccaaatttttgggaactcaacggcgaaagcgacaaatgattctaggcggatcaaaacaagctctcgataccatgtt 37928129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 431
Target Start/End: Complemental strand, 54148393 - 54148343
Alignment:
Q  380 taaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||||||||||||||| | |||||| | |||||||||||||||||||||    
T  54148393 taaaatatcaatagcttaataatacaaatg-ttatgagagaatatataataa 54148343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 25186978 - 25187018
Alignment:
Q  370 tagggttttataaaatatcaatagcttaacattacaaaagg 410  Q
    |||||||| |||||||||||| ||||||||||| |||||||    
T  25186978 tagggtttcataaaatatcaacagcttaacattgcaaaagg 25187018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 239 - 431
Target Start/End: Original strand, 46964269 - 46964460
Alignment:
Q  239 attcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaacgatgctcttgataccatgttnnnnnnncaaatacaaaata 338  Q
    ||||||||| |||||||||| ||| |||||||||||  | ||| ||| || || |||||| | |||||||||||||||||       || ||| |||||     
T  46964269 attcccaaacttttgggaactcaacagcggaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatataaaatg 46964368  T
Q  339 gagaaagagagaataggaacaacaatacggctagggtttta-taaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    |||||||||||||||||||||||   ||||||| | ||| | || | || ||||||||||| ||||||||| ||||| ||||||||||||||||    
T  46964369 gagaaagagagaataggaacaac--gacggctacgatttcattagactaacaatagcttaatattacaaaaagttataagagaatatataataa 46964460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 431
Target Start/End: Original strand, 6840546 - 6840648
Alignment:
Q  329 atacaaaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    |||||||||||||||| ||||||||  || |||||  |||| || ||||| |||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  6840546 atacaaaatagagaaacagagaatat-aagaacaaagacggttatggtttcataaaatatcaatagctttacattacaaaaggttataaaagaatatata 6840644  T
Q  428 ataa 431  Q
    ||||    
T  6840645 ataa 6840648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 431
Target Start/End: Original strand, 46963009 - 46963106
Alignment:
Q  333 aaaatagagaaagagagaataggaacaacaatacggctagggttttataa-aatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||| ||||||||||||||||||||||| |  |||||| | ||| || | |||| ||||||||||||||||||||||||||| ||||||||| ||||||    
T  46963009 aaaatggagaaagagagaataggaacaacga--cggctacgatttcattataataacaatagcttaacattacaaaaggttataagagaatatctaataa 46963106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 431
Target Start/End: Original strand, 2628224 - 2628285
Alignment:
Q  370 tagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    |||||||| ||| ||||||||||| ||||||||||||||  |||||||||||||||||||||    
T  2628224 tagggtttcatataatatcaatagtttaacattacaaaaaattatgagagaatatataataa 2628285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 17927761 - 17927820
Alignment:
Q  213 aaattaaaccaaatcaatcacacaacattcccaaatttttgggaacacaaaagcggaagc 272  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||| ||| |||||||||    
T  17927761 aaattaaaccaaatcaatcacacaacattcccaaacttttgaaaactcaatagcggaagc 17927820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 369 - 431
Target Start/End: Original strand, 15614230 - 15614292
Alignment:
Q  369 ctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||||| ||| |||| ||||||||||| ||||||||||||||| | ||||||||||||||    
T  15614230 ctagggtttcatagaataacaatagcttaatattacaaaaggttataaaagaatatataataa 15614292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 26403564 - 26403516
Alignment:
Q  383 aatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||||||||||    
T  26403564 aataacaatagcataacattacaaaaagttataagagaatatataataa 26403516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 427
Target Start/End: Complemental strand, 5763771 - 5763704
Alignment:
Q  360 acaatacggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    |||| |||||| |||| | |||||||||||||| ||||| ||||||||| ||||  ||||||||||||    
T  5763771 acaaaacggcttgggtgtcataaaatatcaatatcttaatattacaaaatgttacaagagaatatata 5763704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 21812782 - 21812725
Alignment:
Q  195 ccaaaagaccaacactataaattaaaccaaatcaatcacacaacattcccaaattttt 252  Q
    ||||||||||||  ||| ||| ||||||||||||| ||| |||||||||||| |||||    
T  21812782 ccaaaagaccaattctagaaactaaaccaaatcaaacacgcaacattcccaacttttt 21812725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 427
Target Start/End: Original strand, 39349344 - 39349440
Alignment:
Q  332 caaaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    ||||||| | ||||||||||| |||||||||||   ||| ||||||| ||| |||| || || ||| ||||||||||||||||   |||||||||||    
T  39349344 caaaataaataaagagagaatgggaacaacaatggaggcaagggtttcatagaatagcattaacttgacattacaaaaggttacaggagaatatata 39349440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 431
Target Start/End: Complemental strand, 44337476 - 44337416
Alignment:
Q  371 agggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||| |||||||| ||||||| |  |||||| ||| ||||| ||||||||||||||||    
T  44337476 agggtttcataaaataacaatagcattgcattactaaatgttataagagaatatataataa 44337416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 43516295 - 43516198
Alignment:
Q  329 atacaaaatagagaaagagagaataggaacaacaatacggctagggttt-tataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 427  Q
    |||||||||||||||| ||||||||||||||  |  |||||||||||||  ||| |||| || ||||||||||||||| |||||||  ||||||||||||    
T  43516295 atacaaaatagagaaacagagaataggaaca--atgacggctagggtttcaatagaataccattagcttaacattacataaggttactagagaatatata 43516198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 436
Target Start/End: Complemental strand, 43414234 - 43414163
Alignment:
Q  365 acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataacttta 436  Q
    |||| ||| ||||||||||| | |||||| | || |||||||||||||||||||||||||||||||| ||||    
T  43414234 acggttagagttttataaaagaacaatagttgaatattacaaaaggttatgagagaatatataataaattta 43414163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 326 - 392
Target Start/End: Original strand, 14699348 - 14699415
Alignment:
Q  326 caaatacaaaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaata 392  Q
    ||||||||||||||||||||||||||||||||||| |||    | |||||||||||||||||| ||||    
T  14699348 caaatacaaaatagagaaagagagaataggaacaataatgtaagttagggttttataaaatattaata 14699415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 431
Target Start/End: Complemental strand, 20241154 - 20241094
Alignment:
Q  371 agggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||| |||||||| ||||||| |  |||||| ||| ||||| ||||||||||||||||    
T  20241154 agggtttcataaaataacaatagcattgcattactaaatgttataagagaatatataataa 20241094  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 431
Target Start/End: Original strand, 20251913 - 20251973
Alignment:
Q  371 agggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 431  Q
    ||||||| |||||||| ||||||| |  |||||| ||| ||||| ||||||||||||||||    
T  20251913 agggtttcataaaataacaatagcattgcattactaaatgttataagagaatatataataa 20251973  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 431
Target Start/End: Complemental strand, 24137773 - 24137667
Alignment:
Q  326 caaatacaaaatagagaaagagaga-ataggaacaacaatac-ggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaata 423  Q
    ||||||||||||||||||||||| | | ||||| |||||    ||||||| ||| ||| ||||||||| ||||||||||||| |||||||| ||||||||    
T  24137773 caaatacaaaatagagaaagagaaagagaggaataacaacggaggctagg-tttcatataatatcaattgcttaacattacagaaggttataagagaata 24137675  T
Q  424 tataataa 431  Q
    ||||||||    
T  24137674 tataataa 24137667  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 431
Target Start/End: Complemental strand, 6643533 - 6643432
Alignment:
Q  329 atacaaaatagagaaagagagaataggaacaacaatacggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataa 428  Q
    |||||||||||| || |||||||| | ||||| || | ||||||||||| ||| |||| || ||||||||||||  ||||||||||  ||||||||||||    
T  6643533 atacaaaatagaaaatgagagaatggaaacaataaaatggctagggtttcatagaataaca-tagcttaacattgtaaaaggttatatgagaatatataa 6643435  T
Q  429 taa 431  Q
    |||    
T  6643434 taa 6643432  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 335 - 431
Target Start/End: Original strand, 11343870 - 11343967
Alignment:
Q  335 aatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattac-aaaaggttatgagagaatatataataa 431  Q
    ||||||||||||||||| | ||| |||||  ||||||| ||||| |||||| ||||||||||||||||||| |||| ||||| ||||| ||||||||||    
T  11343870 aatagagaaagagagaacatgaataacaaagacggctaaggtttcataaaa-atcaatagcttaacattacaaaaatgttataagagagtatataataa 11343967  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 317
Target Start/End: Original strand, 11336178 - 11336258
Alignment:
Q  237 acattcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaacgatgctcttgataccatgt 317  Q
    ||||||||||| |||||||||| ||| ||| |||||||  | ||||| | |  | ||||||| ||||||||||||||||||    
T  11336178 acattcccaaaattttgggaacccaacagccgaagcgacgagtaatttaagaagaatcaaaccatgctcttgataccatgt 11336258  T

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